Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RJW49_RS04520 Genome accession   NZ_CP134477
Coordinates   850523..852325 (+) Length   600 a.a.
NCBI ID   WP_014735702.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 845523..857325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS04505 (RJW49_04505) - 846540..847133 (-) 594 WP_014735699.1 DUF1361 domain-containing protein -
  RJW49_RS04510 (RJW49_04510) metG 847289..849292 (+) 2004 WP_014735700.1 methionine--tRNA ligase -
  RJW49_RS04515 (RJW49_04515) coiA 849353..850294 (+) 942 WP_074393710.1 competence protein CoiA Machinery gene
  RJW49_RS04520 (RJW49_04520) pepF 850523..852325 (+) 1803 WP_014735702.1 oligoendopeptidase F Regulator
  RJW49_RS04525 (RJW49_04525) - 852327..852762 (+) 436 Protein_845 hypothetical protein -
  RJW49_RS04530 (RJW49_04530) - 852784..853332 (+) 549 WP_002938103.1 DUF6630 family protein -
  RJW49_RS04535 (RJW49_04535) - 853407..854126 (+) 720 WP_044678517.1 O-methyltransferase -
  RJW49_RS04540 (RJW49_04540) prsA 854187..855188 (+) 1002 WP_074393711.1 peptidylprolyl isomerase PrsA -
  RJW49_RS04545 (RJW49_04545) - 855453..855938 (+) 486 WP_014735706.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69203.42 Da        Isoelectric Point: 4.5992

>NTDB_id=880212 RJW49_RS04520 WP_014735702.1 850523..852325(+) (pepF) [Streptococcus suis strain NLS40]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISKTQLSLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=880212 RJW49_RS04520 WP_014735702.1 850523..852325(+) (pepF) [Streptococcus suis strain NLS40]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACGGATGAAGCTTGGGA
AGCAGAACTTGCGGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTACTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCAAAACGCAACTTAGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCTTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTATGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCCCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTTATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTTAGTACTAAGATTTCTTACGAAGATGCTCTAAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGTGAAGATTATTCTGCTATCGTTAAAGAAGCTTTTGAAAATCGCTGGATTGA
TGTTCATGTTAATGAAGGAAAACGCTCAGGAGCTTATTCAGGCGGTGCCTACGATACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTTTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTCCTAACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAAGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGGACAGTCT
TCCGCCAGACCCAATTCGCCGAGTTTGAGCAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACGGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTAGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697