Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RJW49_RS04515 Genome accession   NZ_CP134477
Coordinates   849353..850294 (+) Length   313 a.a.
NCBI ID   WP_074393710.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844353..855294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS04500 (RJW49_04500) - 845202..846239 (-) 1038 WP_074393709.1 3-deoxy-7-phosphoheptulonate synthase -
  RJW49_RS04505 (RJW49_04505) - 846540..847133 (-) 594 WP_014735699.1 DUF1361 domain-containing protein -
  RJW49_RS04510 (RJW49_04510) metG 847289..849292 (+) 2004 WP_014735700.1 methionine--tRNA ligase -
  RJW49_RS04515 (RJW49_04515) coiA 849353..850294 (+) 942 WP_074393710.1 competence protein CoiA Machinery gene
  RJW49_RS04520 (RJW49_04520) pepF 850523..852325 (+) 1803 WP_014735702.1 oligoendopeptidase F Regulator
  RJW49_RS04525 (RJW49_04525) - 852327..852762 (+) 436 Protein_845 hypothetical protein -
  RJW49_RS04530 (RJW49_04530) - 852784..853332 (+) 549 WP_002938103.1 DUF6630 family protein -
  RJW49_RS04535 (RJW49_04535) - 853407..854126 (+) 720 WP_044678517.1 O-methyltransferase -
  RJW49_RS04540 (RJW49_04540) prsA 854187..855188 (+) 1002 WP_074393711.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36300.95 Da        Isoelectric Point: 7.6272

>NTDB_id=880211 RJW49_RS04515 WP_074393710.1 849353..850294(+) (coiA) [Streptococcus suis strain NLS40]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDCLALEVQCSSLPISRLQLRTQAYREAGLQVLWLLGKGLWIKEILSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKFFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=880211 RJW49_RS04515 WP_074393710.1 849353..850294(+) (coiA) [Streptococcus suis strain NLS40]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATTGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCAATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCGTGAGGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAATATTAAGTAAATTACACAAGCAATTCCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCTCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428