Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WOC42_RS13070 Genome accession   NZ_CP150786
Coordinates   2614422..2615162 (+) Length   246 a.a.
NCBI ID   WP_000216878.1    Uniprot ID   A0A0H2XJD3
Organism   Staphylococcus aureus strain TUM20817     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2609422..2620162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC42_RS13045 (WOC42_13050) yhaM 2609840..2610781 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  WOC42_RS13050 (WOC42_13055) - 2610902..2611864 (-) 963 WP_000782121.1 foldase protein PrsA -
  WOC42_RS13055 (WOC42_13060) - 2612069..2612626 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  WOC42_RS13060 (WOC42_13065) - 2613359..2613724 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  WOC42_RS13065 (WOC42_13070) - 2613866..2614288 (-) 423 WP_000004981.1 HIT family protein -
  WOC42_RS13070 (WOC42_13075) pptA 2614422..2615162 (+) 741 WP_000216878.1 ABC transporter ATP-binding protein EcsA Regulator
  WOC42_RS13075 (WOC42_13080) ecsB 2615155..2616378 (+) 1224 WP_001245769.1 ABC transporter permease EcsB -
  WOC42_RS13080 (WOC42_13085) traP 2616502..2617005 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  WOC42_RS13085 (WOC42_13090) - 2617168..2617278 (+) 111 WP_001790154.1 hypothetical protein -
  WOC42_RS13090 (WOC42_13095) hemE 2617268..2618305 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  WOC42_RS13095 (WOC42_13100) hemH 2618363..2619286 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27717.04 Da        Isoelectric Point: 4.6672

>NTDB_id=880211 WOC42_RS13070 WP_000216878.1 2614422..2615162(+) (pptA) [Staphylococcus aureus strain TUM20817]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDETMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=880211 WOC42_RS13070 WP_000216878.1 2614422..2615162(+) (pptA) [Staphylococcus aureus strain TUM20817]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAACGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAGTTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545