Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OCX20_RS02625 Genome accession   NZ_AP024738
Coordinates   559822..560391 (+) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain 59731     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 554822..565391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS02600 cysE 556035..556682 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OCX20_RS02605 cysS 556666..558066 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OCX20_RS02610 - 558059..558463 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OCX20_RS02615 rlmB 558471..559217 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCX20_RS02620 - 559217..559741 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OCX20_RS02625 sigH 559822..560391 (+) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  OCX20_RS02630 rpmG 560506..560649 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OCX20_RS02635 secE 560705..560887 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OCX20_RS02640 nusG 560900..561448 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OCX20_RS02645 rplK 561629..562051 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OCX20_RS02650 rplA 562259..562951 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OCX20_RS02655 rplJ 563223..563723 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OCX20_RS02660 rplL 563766..564134 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OCX20_RS02665 - 564309..564917 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=88021 OCX20_RS02625 WP_000872877.1 559822..560391(+) (sigH) [Staphylococcus aureus strain 59731]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=88021 OCX20_RS02625 WP_000872877.1 559822..560391(+) (sigH) [Staphylococcus aureus strain 59731]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment