Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RJW55_RS00890 Genome accession   NZ_CP134473
Coordinates   150592..150987 (+) Length   131 a.a.
NCBI ID   WP_043026005.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 145592..155987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS00865 (RJW55_00865) - 147209..147493 (+) 285 WP_043025919.1 DUF4651 domain-containing protein -
  RJW55_RS00870 (RJW55_00870) - 147490..147810 (+) 321 WP_043025917.1 thioredoxin family protein -
  RJW55_RS00875 (RJW55_00875) - 148125..149081 (+) 957 WP_043026008.1 DUF1002 domain-containing protein -
  RJW55_RS00880 (RJW55_00880) ytpR 149100..149723 (+) 624 WP_032511905.1 YtpR family tRNA-binding protein -
  RJW55_RS00885 (RJW55_00885) - 149758..150537 (-) 780 WP_024377779.1 DUF2785 domain-containing protein -
  RJW55_RS00890 (RJW55_00890) ssbB 150592..150987 (+) 396 WP_043026005.1 single-stranded DNA-binding protein Machinery gene
  RJW55_RS00895 (RJW55_00895) groES 151699..151980 (+) 282 WP_014637330.1 co-chaperone GroES -
  RJW55_RS00900 (RJW55_00900) groL 151992..153614 (+) 1623 WP_043026003.1 chaperonin GroEL -
  RJW55_RS00905 (RJW55_00905) rpsL 153856..154269 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  RJW55_RS00910 (RJW55_00910) rpsG 154286..154756 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14921.84 Da        Isoelectric Point: 5.0026

>NTDB_id=880150 RJW55_RS00890 WP_043026005.1 150592..150987(+) (ssbB) [Streptococcus suis strain TMW_SS028]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNANDDLVDVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=880150 RJW55_RS00890 WP_043026005.1 150592..150987(+) (ssbB) [Streptococcus suis strain TMW_SS028]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCGGAACTCACTCAAACACCAACTGGTAAAAATTTGAC
TCGTGTTACTGTTGCAGTTAATCGCCGATTTAAGACAGAAAATGGCGAACGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTCTAGGCCAATCATTCCAATTGCTTGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCGAATGATGATTTGGTGGATGTGATTTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382