Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RJW55_RS01245 Genome accession   NZ_CP134473
Coordinates   245539..246252 (+) Length   237 a.a.
NCBI ID   WP_024380213.1    Uniprot ID   A0A0Z8IMN0
Organism   Streptococcus suis strain TMW_SS028     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 240539..251252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS01230 (RJW55_01230) - 240903..241265 (-) 363 WP_043027001.1 iron chaperone -
  RJW55_RS01235 (RJW55_01235) treC 241334..242959 (-) 1626 WP_043025942.1 alpha,alpha-phosphotrehalase -
  RJW55_RS01240 (RJW55_01240) treP 243310..245304 (-) 1995 WP_043027047.1 PTS system trehalose-specific EIIBC component -
  RJW55_RS01245 (RJW55_01245) treR 245539..246252 (+) 714 WP_024380213.1 trehalose operon repressor Regulator
  RJW55_RS01250 (RJW55_01250) - 246310..246621 (+) 312 WP_024406827.1 hypothetical protein -
  RJW55_RS01255 (RJW55_01255) - 246618..247166 (+) 549 WP_029175774.1 CvpA family protein -
  RJW55_RS01260 (RJW55_01260) - 247322..249655 (+) 2334 WP_043027046.1 endonuclease MutS2 -
  RJW55_RS01265 (RJW55_01265) - 249679..250332 (+) 654 WP_043027045.1 GNAT family N-acetyltransferase -
  RJW55_RS01270 (RJW55_01270) trxA 250856..251170 (+) 315 WP_043027044.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27213.11 Da        Isoelectric Point: 6.7419

>NTDB_id=880151 RJW55_RS01245 WP_024380213.1 245539..246252(+) (treR) [Streptococcus suis strain TMW_SS028]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=880151 RJW55_RS01245 WP_024380213.1 245539..246252(+) (treR) [Streptococcus suis strain TMW_SS028]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGCCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IMN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515