Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RJW55_RS00400 Genome accession   NZ_CP134473
Coordinates   73827..75008 (+) Length   393 a.a.
NCBI ID   WP_043025095.1    Uniprot ID   A0A0Z8H752
Organism   Streptococcus suis strain TMW_SS028     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 68827..80008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS00385 (RJW55_00385) mutL 70050..71987 (+) 1938 WP_043025667.1 DNA mismatch repair endonuclease MutL -
  RJW55_RS00390 (RJW55_00390) ruvA 72026..72616 (+) 591 WP_043025669.1 Holliday junction branch migration protein RuvA -
  RJW55_RS00395 (RJW55_00395) - 73221..73790 (+) 570 WP_043025096.1 DNA-3-methyladenine glycosylase I -
  RJW55_RS00400 (RJW55_00400) cinA 73827..75008 (+) 1182 WP_043025095.1 competence/damage-inducible protein A Machinery gene
  RJW55_RS00405 (RJW55_00405) recA 75060..76211 (+) 1152 WP_004195473.1 recombinase RecA Machinery gene
  RJW55_RS00410 (RJW55_00410) spx 76371..76769 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  RJW55_RS00415 (RJW55_00415) - 76876..77142 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RJW55_RS00420 (RJW55_00420) ruvX 77142..77561 (+) 420 WP_061756370.1 Holliday junction resolvase RuvX -
  RJW55_RS00425 (RJW55_00425) - 77573..77890 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  RJW55_RS00430 (RJW55_00430) - 78086..78631 (+) 546 Protein_65 nucleotidyltransferase family protein -
  RJW55_RS00435 (RJW55_00435) comX/sigX 78726..79196 (+) 471 WP_043025097.1 sigma-70 family RNA polymerase sigma factor Regulator
  RJW55_RS00440 (RJW55_00440) rpsJ 79462..79770 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42919.83 Da        Isoelectric Point: 4.4531

>NTDB_id=880137 RJW55_RS00400 WP_043025095.1 73827..75008(+) (cinA) [Streptococcus suis strain TMW_SS028]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LAAFLGRKLVFDEKAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKAISQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKSESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=880137 RJW55_RS00400 WP_043025095.1 73827..75008(+) (cinA) [Streptococcus suis strain TMW_SS028]
ATGAAAGCAGAACTAATCGCCGTCGGAACCGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTATCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACT
TTGGCAGCCTTCTTAGGTAGAAAATTGGTCTTTGATGAAAAAGCCATGGCAAAATTAGACCGCTTCTTTGCCAGCCGACC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGG
CGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGATCAGCCAAGAAGAGGCAAATCTACGTTTAAATCAGTTGGAAGAGGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAATCGGAATCGACAGAGGACAA
TGTACTTGCAAAAGTATACCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8H752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.674

100

0.957
  cinA Streptococcus mitis SK321

56.01

100

0.593
  cinA Streptococcus pneumoniae TIGR4

56.01

100

0.593
  cinA Streptococcus pneumoniae Rx1

56.01

100

0.593
  cinA Streptococcus pneumoniae R6

56.01

100

0.593
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus mitis NCTC 12261

55.769

100

0.59
  cinA Streptococcus pneumoniae D39

55.769

100

0.59
  cinA Bacillus subtilis subsp. subtilis str. 168

48.208

78.117

0.377