Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX48_RS11025 Genome accession   NZ_AP024736
Coordinates   2201795..2202190 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59709     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2196795..2207190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS11000 thiE 2197257..2197898 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX48_RS11005 thiM 2197891..2198691 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX48_RS11010 thiD 2198675..2199505 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX48_RS11015 tenA 2199498..2200187 (-) 690 WP_000396077.1 thiaminase II -
  OCX48_RS11020 sceD 2200711..2201406 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX48_RS11025 ssb 2201795..2202190 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX48_RS11030 - 2202384..2202824 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX48_RS11035 fabZ 2202882..2203322 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX48_RS11040 murA 2203356..2204621 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX48_RS11045 - 2204732..2204965 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX48_RS11050 - 2205097..2205189 (-) 93 WP_031864518.1 hypothetical protein -
  OCX48_RS11055 - 2205527..2205931 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=88009 OCX48_RS11025 WP_000932692.1 2201795..2202190(-) (ssb) [Staphylococcus aureus strain 59709]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=88009 OCX48_RS11025 WP_000932692.1 2201795..2202190(-) (ssb) [Staphylococcus aureus strain 59709]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment