Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RIU93_RS11160 Genome accession   NZ_CP134464
Coordinates   2241078..2241743 (-) Length   221 a.a.
NCBI ID   WP_047211221.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 2023.05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236078..2246743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU93_RS11145 (RIU93_11145) - 2237314..2239308 (-) 1995 WP_232013275.1 ABC transporter permease -
  RIU93_RS11150 (RIU93_11150) - 2239326..2240072 (-) 747 WP_049414576.1 ABC transporter ATP-binding protein -
  RIU93_RS11155 (RIU93_11155) braS 2240176..2241072 (-) 897 WP_047211220.1 HAMP domain-containing sensor histidine kinase Regulator
  RIU93_RS11160 (RIU93_11160) braR 2241078..2241743 (-) 666 WP_047211221.1 response regulator transcription factor Regulator
  RIU93_RS11165 (RIU93_11165) - 2241765..2241923 (-) 159 WP_002467360.1 hypothetical protein -
  RIU93_RS11170 (RIU93_11170) - 2242180..2243634 (+) 1455 WP_049414579.1 alkaline phosphatase -
  RIU93_RS11175 (RIU93_11175) - 2243717..2243818 (-) 102 WP_015364644.1 SE2200 family small protein -
  RIU93_RS11180 (RIU93_11180) - 2243999..2245462 (-) 1464 WP_213463753.1 poly-gamma-glutamate hydrolase family protein -
  RIU93_RS11185 (RIU93_11185) - 2245697..2246146 (-) 450 WP_311095277.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25499.62 Da        Isoelectric Point: 4.9722

>NTDB_id=880077 RIU93_RS11160 WP_047211221.1 2241078..2241743(-) (braR) [Staphylococcus warneri strain 2023.05]
MKILIVEDDLVIAESLASELKKWNYDVKMAKQFSHVLDDFKDYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=880077 RIU93_RS11160 WP_047211221.1 2241078..2241743(-) (braR) [Staphylococcus warneri strain 2023.05]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAGTGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAGTTTTCGCATGTTTTAGATGATTTCAAAGACTATCTACCTGACCTAGTACTACTAGATATTAATT
TACCAACTTTAAATGGCTTCCATTGGTGCCAAGAAATGAGAAAAATCTCAAACGTACCTATTATATTTATTAGTTCAAGG
ACAGATAATATGGATCAAATAATGGCGATACAAATGGGTGGCGATGATTTTATTGAGAAACCATTTAATTTATCGTTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAATAATGAATTAAATGTTAAGGGATGTA
AACTTATCGTTGATGAGGCTAAGTTAATGTTTCAAGATGATGTGACACAACTGTCTTTAACAGAACTTCAAATCGTTAAA
CTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCTGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGATATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792