Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX48_RS08295 Genome accession   NZ_AP024736
Coordinates   1694406..1695092 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59709     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689406..1700092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS08275 rpsT 1690320..1690571 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX48_RS08280 holA 1690616..1691590 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX48_RS08285 comEC 1691647..1693848 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX48_RS08290 - 1693853..1694314 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX48_RS08295 comEA 1694406..1695092 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX48_RS08300 - 1695132..1695848 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OCX48_RS08305 rsfS 1695851..1696204 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX48_RS08310 yqeK 1696205..1696789 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX48_RS08315 nadD 1696779..1697348 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX48_RS08320 yhbY 1697351..1697641 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX48_RS08325 aroE 1697645..1698451 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX48_RS08330 yqeH 1698465..1699565 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=87998 OCX48_RS08295 WP_001793467.1 1694406..1695092(-) (comEA) [Staphylococcus aureus strain 59709]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=87998 OCX48_RS08295 WP_001793467.1 1694406..1695092(-) (comEA) [Staphylococcus aureus strain 59709]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment