Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   RJ558_RS00940 Genome accession   NZ_CP134397
Coordinates   198464..199447 (+) Length   327 a.a.
NCBI ID   WP_180662630.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003s     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193464..204447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS00910 (RJ558_00910) panD 194874..195224 (+) 351 WP_180662627.1 aspartate 1-decarboxylase -
  RJ558_RS00915 (RJ558_00915) - 195235..195528 (+) 294 WP_000347919.1 YbaB/EbfC family nucleoid-associated protein -
  RJ558_RS00920 (RJ558_00920) - 195528..196532 (+) 1005 WP_310957715.1 PDZ domain-containing protein -
  RJ558_RS00925 (RJ558_00925) comB6 196540..197595 (+) 1056 WP_310958088.1 P-type conjugative transfer protein TrbL Machinery gene
  RJ558_RS00930 (RJ558_00930) comB7 197611..197724 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  RJ558_RS00935 (RJ558_00935) comB8 197721..198464 (+) 744 WP_001208395.1 virB8 family protein Machinery gene
  RJ558_RS00940 (RJ558_00940) comB9 198464..199447 (+) 984 WP_180662630.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  RJ558_RS00945 (RJ558_00945) comB10 199440..200576 (+) 1137 WP_310957716.1 DNA type IV secretion system protein ComB10 Machinery gene
  RJ558_RS00950 (RJ558_00950) - 200646..202058 (+) 1413 WP_180662633.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  RJ558_RS00955 (RJ558_00955) gmd 202099..203244 (+) 1146 WP_180662634.1 GDP-mannose 4,6-dehydratase -
  RJ558_RS00960 (RJ558_00960) - 203237..204169 (+) 933 WP_127937927.1 GDP-L-fucose synthase -
  RJ558_RS07705 - 204194..204319 (-) 126 WP_375294946.1 hypothetical protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37745.36 Da        Isoelectric Point: 9.0270

>NTDB_id=879949 RJ558_RS00940 WP_180662630.1 198464..199447(+) (comB9) [Helicobacter pylori strain ICDC15003s]
MRKFLYALMGFLLAFSALEADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENTPTNNKPLKEEPLKEEKEESKEKEEETITIGDNTNAMTIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=879949 RJ558_RS00940 WP_180662630.1 198464..199447(+) (comB9) [Helicobacter pylori strain ICDC15003s]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGCTTTTAGCGCTTTAGAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCAATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCTAATATCAGTGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATACCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAAGTAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAACG
CCATGACAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATAGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.26

100

0.954