Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | RJ565_RS00275 | Genome accession | NZ_CP134396 |
| Coordinates | 62189..62764 (+) | Length | 191 a.a. |
| NCBI ID | WP_310957610.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ICDC15003-8-1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57189..67764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJ565_RS00250 (RJ565_00250) | uvrD | 57880..59925 (+) | 2046 | WP_310957608.1 | DNA helicase UvrD | - |
| RJ565_RS00255 (RJ565_00255) | flgA | 59922..60578 (+) | 657 | WP_231265558.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| RJ565_RS00260 (RJ565_00260) | - | 60588..61151 (+) | 564 | WP_220902417.1 | UbiX family flavin prenyltransferase | - |
| RJ565_RS00265 (RJ565_00265) | coaD | 61151..61624 (+) | 474 | WP_310957609.1 | pantetheine-phosphate adenylyltransferase | - |
| RJ565_RS00270 (RJ565_00270) | tmk | 61626..62201 (+) | 576 | WP_220919620.1 | dTMP kinase | - |
| RJ565_RS00275 (RJ565_00275) | comFC | 62189..62764 (+) | 576 | WP_310957610.1 | ComF family protein | Machinery gene |
| RJ565_RS00280 (RJ565_00280) | - | 62797..64836 (+) | 2040 | WP_310957611.1 | N-6 DNA methylase | - |
| RJ565_RS00285 (RJ565_00285) | - | 64833..65498 (+) | 666 | WP_310957612.1 | restriction endonuclease subunit S | - |
| RJ565_RS00290 (RJ565_00290) | - | 65525..66055 (+) | 531 | WP_310957613.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21335.86 Da Isoelectric Point: 9.0978
>NTDB_id=879922 RJ565_RS00275 WP_310957610.1 62189..62764(+) (comFC) [Helicobacter pylori strain ICDC15003-8-1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNSVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRASNSVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=879922 RJ565_RS00275 WP_310957610.1 62189..62764(+) (comFC) [Helicobacter pylori strain ICDC15003-8-1]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTATGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CACTAATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATTCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTATGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CACTAATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTTCTAATTCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |