NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	RJ564_RS02415	Genome accession	NZ_CP134394
Coordinates	504831..505631 (+)	Length	266 a.a.
NCBI ID	WP_180662752.1	Uniprot ID	-
Organism	Helicobacter pylori strain ICDC15003-50-1
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 499831..510631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJ564_RS02380 (RJ564_02380)	pseH	500322..500864 (+)	543	WP_310957895.1	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	-
RJ564_RS02385 (RJ564_02385)	-	500797..501735 (-)	939	WP_310957896.1	tetraacyldisaccharide 4'-kinase	-
RJ564_RS02390 (RJ564_02390)	-	501732..502514 (-)	783	WP_310957897.1	NAD+ synthase	-
RJ564_RS02400 (RJ564_02400)	ilvC	502772..503764 (+)	993	WP_310957898.1	ketol-acid reductoisomerase	-
RJ564_RS02405 (RJ564_02405)	minD	503788..504594 (+)	807	WP_001019049.1	septum site-determining protein MinD	-
RJ564_RS02410 (RJ564_02410)	minE	504591..504824 (+)	234	WP_000051425.1	cell division topological specificity factor MinE	-
RJ564_RS02415 (RJ564_02415)	dprA	504831..505631 (+)	801	WP_180662752.1	DNA-processing protein DprA	Machinery gene
RJ564_RS02420 (RJ564_02420)	dprB	505628..506032 (+)	405	WP_180662754.1	Holliday junction resolvase RuvX	Machinery gene
RJ564_RS02425 (RJ564_02425)	-	506163..506731 (+)	569	Protein_473	tetratricopeptide repeat protein	-
RJ564_RS02430 (RJ564_02430)	-	506917..507255 (+)	339	WP_180662755.1	hypothetical protein	-
RJ564_RS02435 (RJ564_02435)	-	507239..507799 (+)	561	WP_180662757.1	hypothetical protein	-
RJ564_RS02440 (RJ564_02440)	-	507901..508782 (-)	882	WP_180662759.1	pseudouridine synthase	-
RJ564_RS02445 (RJ564_02445)	recJ	508782..510332 (-)	1551	WP_180662761.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

Download Length: 266 a.a. Molecular weight: 29857.65 Da Isoelectric Point: 7.2880

                                >NTDB_id=879893 RJ564_RS02415 WP_180662752.1 504831..505631(+) (dprA) [Helicobacter pylori strain ICDC15003-50-1]

MKSNFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV

DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLQSG

SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMEDEFLEYCAKNPSYEEAY

LKFGDKLLEYELLGKIRRINHLVVLA

Nucleotide

Download Length: 801 bp

                                >NTDB_id=879893 RJ564_RS02415 WP_180662752.1 504831..505631(+) (dprA) [Helicobacter pylori strain ICDC15003-50-1]

ATGAAAAGTAATTTCCAATACAGCGCACTAGAAAATATCCCTAAAGCTTTTGACATTCTCAAAGACCCCCCTAAAAAGCT

CTATTGTGTGGGCGATACAAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA

GCAAGCAACACACGATCACTCTAGCTAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG

GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA

CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG

GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTACAAAGCGGC

TCTATGAGCAGCGCGAGATTAGCTCAAAAATACCAAAAGCCATTATTTGTTTTACCCCAGCGCTTGAATGAGAGCGATGG

CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT

ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT

CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAGGCGCATCAATCATCTCGTGGTGTTAGCATG

A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Helicobacter pylori 26695	96.617	100	0.966
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.23	84.962	0.41

Detailed information NTG0879893