Detailed information NTG0879889

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: RJ564_RS00945
• Genome accession: NZ_CP134394
• Coordinates: 198467..199450 (+)
• Length: 327 a.a.
• NCBI ID: WP_180662630.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ICDC15003-50-1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 193467..204450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJ564_RS00915 (RJ564_00915)	panD	194877..195227 (+)	351	WP_180662627.1	aspartate 1-decarboxylase	-
RJ564_RS00920 (RJ564_00920)	-	195238..195531 (+)	294	WP_000347919.1	YbaB/EbfC family nucleoid-associated protein	-
RJ564_RS00925 (RJ564_00925)	-	195531..196535 (+)	1005	WP_310957715.1	PDZ domain-containing protein	-
RJ564_RS00930 (RJ564_00930)	comB6	196543..197598 (+)	1056	WP_310958088.1	P-type conjugative transfer protein TrbL	Machinery gene
RJ564_RS00935 (RJ564_00935)	comB7	197614..197727 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
RJ564_RS00940 (RJ564_00940)	comB8	197724..198467 (+)	744	WP_001208395.1	virB8 family protein	Machinery gene
RJ564_RS00945 (RJ564_00945)	comB9	198467..199450 (+)	984	WP_180662630.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
RJ564_RS00950 (RJ564_00950)	comB10	199443..200579 (+)	1137	WP_310957716.1	DNA type IV secretion system protein ComB10	Machinery gene
RJ564_RS00955 (RJ564_00955)	-	200649..202061 (+)	1413	WP_180662633.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
RJ564_RS00960 (RJ564_00960)	gmd	202102..203247 (+)	1146	WP_180662634.1	GDP-mannose 4,6-dehydratase	-
RJ564_RS00965 (RJ564_00965)	-	203240..204172 (+)	933	WP_127937927.1	GDP-L-fucose synthase	-
RJ564_RS07725	-	204197..204322 (-)	126	WP_375294946.1	hypothetical protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37745.36 Da
• Isoelectric Point: 9.0270

>NTDB_id=879889 RJ564_RS00945 WP_180662630.1 198467..199450(+) (comB9) [Helicobacter pylori strain ICDC15003-50-1]
MRKFLYALMGFLLAFSALEADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENTPTNNKPLKEEPLKEEKEESKEKEEETITIGDNTNAMTIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=879889 RJ564_RS00945 WP_180662630.1 198467..199450(+) (comB9) [Helicobacter pylori strain ICDC15003-50-1]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGCTTTTAGCGCTTTAGAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCAATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCTAATATCAGTGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATACCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAAGTAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAACG
CCATGACAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATAGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.26	100	0.954