Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX19_RS11175 Genome accession   NZ_AP024734
Coordinates   2223925..2224320 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59691     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2218925..2229320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX19_RS11150 thiE 2219387..2220028 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX19_RS11155 thiM 2220021..2220821 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX19_RS11160 thiD 2220805..2221635 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX19_RS11165 tenA 2221628..2222317 (-) 690 WP_000396077.1 thiaminase II -
  OCX19_RS11170 sceD 2222841..2223536 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX19_RS11175 ssb 2223925..2224320 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX19_RS11180 - 2224514..2224954 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX19_RS11185 fabZ 2225012..2225452 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX19_RS11190 murA 2225486..2226751 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX19_RS11195 - 2226862..2227095 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX19_RS11200 - 2227227..2227319 (-) 93 WP_031864518.1 hypothetical protein -
  OCX19_RS11205 - 2227657..2228061 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=87966 OCX19_RS11175 WP_000932692.1 2223925..2224320(-) (ssb) [Staphylococcus aureus strain 59691]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=87966 OCX19_RS11175 WP_000932692.1 2223925..2224320(-) (ssb) [Staphylococcus aureus strain 59691]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment