Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RJD40_RS02420 Genome accession   NZ_CP134280
Coordinates   504377..504991 (-) Length   204 a.a.
NCBI ID   WP_005593191.1    Uniprot ID   H6URH3
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 499377..509991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS02410 (RJD40_02415) aceF 500674..502566 (+) 1893 WP_418113893.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  RJD40_RS02415 (RJD40_02420) lpdA 502847..504277 (+) 1431 WP_005593190.1 dihydrolipoyl dehydrogenase -
  RJD40_RS02420 (RJD40_02425) opaR 504377..504991 (-) 615 WP_005593191.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  RJD40_RS02425 (RJD40_02430) hpt 505399..505929 (+) 531 WP_005593192.1 hypoxanthine phosphoribosyltransferase -
  RJD40_RS02430 (RJD40_02435) can 506029..506697 (-) 669 WP_005593193.1 carbonate dehydratase -
  RJD40_RS02435 (RJD40_02440) - 506943..508616 (+) 1674 WP_005593194.1 SulP family inorganic anion transporter -
  RJD40_RS02440 (RJD40_02445) - 508817..509740 (+) 924 WP_418113894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23500.78 Da        Isoelectric Point: 5.5969

>NTDB_id=879632 RJD40_RS02420 WP_005593191.1 504377..504991(-) (opaR) [Vibrio scophthalmi strain 21FBVib0106]
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEEA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=879632 RJD40_RS02420 WP_005593191.1 504377..504991(-) (opaR) [Vibrio scophthalmi strain 21FBVib0106]
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCGGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTATTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTGTCA
GACAATATCGACCTAGATTTACACGCTAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGTTATTAGTGCAAAACATGTTTATCAAAGCGATGGAACGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCAACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAGCTAGCGGACAGCTATCTAAACATGTTGTGTATTTACAAAGAAGAAGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H6URH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.788

99.51

0.804
  hapR Vibrio cholerae C6706

77.889

97.549

0.76
  hapR Vibrio cholerae strain A1552

77.889

97.549

0.76