Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RJD39_RS14965 Genome accession   NZ_CP134277
Coordinates   3186745..3187359 (-) Length   204 a.a.
NCBI ID   WP_005593191.1    Uniprot ID   H6URH3
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181745..3192359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS14955 (RJD39_14935) aceF 3183030..3184919 (+) 1890 WP_065429816.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  RJD39_RS14960 (RJD39_14940) lpdA 3185215..3186645 (+) 1431 WP_005593190.1 dihydrolipoyl dehydrogenase -
  RJD39_RS14965 (RJD39_14945) opaR 3186745..3187359 (-) 615 WP_005593191.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  RJD39_RS14970 (RJD39_14950) hpt 3187767..3188297 (+) 531 WP_009385703.1 hypoxanthine phosphoribosyltransferase -
  RJD39_RS14975 (RJD39_14955) can 3188397..3189065 (-) 669 WP_005593193.1 carbonate dehydratase -
  RJD39_RS14980 (RJD39_14960) - 3189311..3190984 (+) 1674 WP_406732629.1 SulP family inorganic anion transporter -
  RJD39_RS14985 (RJD39_14965) - 3191185..3192108 (+) 924 WP_406732631.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23500.78 Da        Isoelectric Point: 5.5969

>NTDB_id=879618 RJD39_RS14965 WP_005593191.1 3186745..3187359(-) (opaR) [Vibrio scophthalmi strain 21FBVib0096]
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEEA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=879618 RJD39_RS14965 WP_005593191.1 3186745..3187359(-) (opaR) [Vibrio scophthalmi strain 21FBVib0096]
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCAGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGACGTATTAAACTATGTGGTACGTCAGTTCTCTAATTTTCTGTCA
GACAATATCGACCTAGATTTACACGCTAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
CTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGCTATTAGTTCAAAACATGTTTATCAAAGCGATGGAACGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCCACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAGCTAGCGGACAGCTATCTAAACATGTTGTGTATTTATAAAGAAGAAGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H6URH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.788

99.51

0.804
  hapR Vibrio cholerae C6706

77.889

97.549

0.76
  hapR Vibrio cholerae strain A1552

77.889

97.549

0.76