Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RJD38_RS09005 Genome accession   NZ_CP134271
Coordinates   1957937..1958551 (-) Length   204 a.a.
NCBI ID   WP_005593191.1    Uniprot ID   H6URH3
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952937..1963551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS08995 (RJD38_08995) aceF 1954234..1956123 (+) 1890 WP_065545702.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  RJD38_RS09000 (RJD38_09000) lpdA 1956407..1957837 (+) 1431 WP_005593190.1 dihydrolipoyl dehydrogenase -
  RJD38_RS09005 (RJD38_09005) opaR 1957937..1958551 (-) 615 WP_005593191.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  RJD38_RS09010 (RJD38_09010) hpt 1958959..1959489 (+) 531 WP_005593192.1 hypoxanthine phosphoribosyltransferase -
  RJD38_RS09015 (RJD38_09015) can 1959589..1960257 (-) 669 WP_367971231.1 carbonate dehydratase -
  RJD38_RS09020 (RJD38_09020) - 1960503..1962176 (+) 1674 WP_005593194.1 SulP family inorganic anion transporter -
  RJD38_RS09025 (RJD38_09025) - 1962377..1963300 (+) 924 WP_065545701.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23500.78 Da        Isoelectric Point: 5.5969

>NTDB_id=879570 RJD38_RS09005 WP_005593191.1 1957937..1958551(-) (opaR) [Vibrio scophthalmi strain 20FBVib0200]
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEEA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=879570 RJD38_RS09005 WP_005593191.1 1957937..1958551(-) (opaR) [Vibrio scophthalmi strain 20FBVib0200]
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCGGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTATTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTTTCA
GACAATATCGACCTAGATTTACACGCCAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGTTATTAGTGCAAAACATGTTTATCAAAGCGATGGAGCGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCAACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAACTAGCGGACAGCTATCTAAACATGTTGTGTATTTATAAAGAAGAAGCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H6URH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.788

99.51

0.804
  hapR Vibrio cholerae C6706

77.889

97.549

0.76
  hapR Vibrio cholerae strain A1552

77.889

97.549

0.76