Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX19_RS08380 Genome accession   NZ_AP024734
Coordinates   1709899..1710585 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59691     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704899..1715585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX19_RS08360 rpsT 1705813..1706064 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX19_RS08365 holA 1706109..1707083 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX19_RS08370 comEC 1707140..1709341 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX19_RS08375 - 1709346..1709807 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX19_RS08380 comEA 1709899..1710585 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX19_RS08385 - 1710625..1711341 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  OCX19_RS08390 rsfS 1711344..1711697 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX19_RS08395 yqeK 1711698..1712282 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX19_RS08400 nadD 1712272..1712841 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX19_RS08405 yhbY 1712844..1713134 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX19_RS08410 aroE 1713138..1713944 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX19_RS08415 yqeH 1713958..1715058 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=87954 OCX19_RS08380 WP_001793467.1 1709899..1710585(-) (comEA) [Staphylococcus aureus strain 59691]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=87954 OCX19_RS08380 WP_001793467.1 1709899..1710585(-) (comEA) [Staphylococcus aureus strain 59691]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment