Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHP47_RS06865 Genome accession   NZ_CP134200
Coordinates   1371930..1373627 (+) Length   565 a.a.
NCBI ID   WP_286625071.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QKsg1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366930..1378627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP47_RS06840 (RHP47_06840) - 1367310..1368011 (-) 702 WP_149819375.1 PilN domain-containing protein -
  RHP47_RS06845 (RHP47_06845) pilM 1368023..1369102 (-) 1080 WP_315862996.1 type IV pilus assembly protein PilM Machinery gene
  RHP47_RS06850 (RHP47_06850) - 1369366..1369947 (-) 582 WP_302677576.1 L,D-transpeptidase -
  RHP47_RS06855 (RHP47_06855) - 1369977..1370408 (-) 432 WP_149819381.1 hypothetical protein -
  RHP47_RS06860 (RHP47_06860) - 1370578..1371807 (-) 1230 WP_286649439.1 acetate/propionate family kinase -
  RHP47_RS06865 (RHP47_06865) comA 1371930..1373627 (+) 1698 WP_286625071.1 phospholipase D-like domain-containing protein Machinery gene
  RHP47_RS06870 (RHP47_06870) - 1373646..1374158 (-) 513 WP_149819388.1 adenine phosphoribosyltransferase -
  RHP47_RS06875 (RHP47_06875) - 1374208..1375512 (-) 1305 WP_226971901.1 NCS2 family permease -
  RHP47_RS06880 (RHP47_06880) - 1375920..1377635 (+) 1716 WP_310840047.1 hypothetical protein -
  RHP47_RS06885 (RHP47_06885) - 1377654..1378445 (+) 792 WP_310840048.1 type II secretion system protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63127.71 Da        Isoelectric Point: 8.0435

>NTDB_id=879247 RHP47_RS06865 WP_286625071.1 1371930..1373627(+) (comA) [Thermosynechococcus sp. QKsg1]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALAARQQTGVRVRVVMENTYTAPWATYSAGQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQPVAVGDAMVTVRFSPTPRSQPWSVSTNGLIGQTLRWARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879247 RHP47_RS06865 WP_286625071.1 1371930..1373627(+) (comA) [Thermosynechococcus sp. QKsg1]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCTTACCCAATCTTGCCAAGGC
CCTAGCAGCACGGCAGCAGACGGGGGTGCGGGTACGGGTGGTGATGGAAAATACCTACACTGCCCCTTGGGCAACATACA
GTGCTGGGCAGGTGAGTGCCATGGATCCAAGGATGCGGGAGCGCTATAACGACTGGAAAGCGCTGGTGGACACCAACGGC
GATGGCCAACTCAGTGCTGCCGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAAGCGAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCCAAAGGCAGTATGCTCATGCACCACAAGTTTATTGTGATTGACAATCGCCAAGTGATTGCGA
CTACGGCGAACTTTACCCTCAGTGATGTCCACGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGTCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATCATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACCAGTAGCGGTGGGCGATGCCATGGTTACAGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCTTGGTCTGTCTCCACCAATGGCTTGATTGGCCAAACACTACGTTGGGCACGCCAA
AAAATTGACATGGCGCTTTTTGTCTTTTCAGATCAAGAACTATCCTACGTTTTAGAGGAACGCCATAACCAAGGGGTTAG
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTGGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTCGACGATCGCACCGTCATTGTTGGTTCTCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACACCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCAAAACTAGCGGCTGAAATTATCCGTGCCC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCCGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.293

100

0.494