Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RHP47_RS06845 Genome accession   NZ_CP134200
Coordinates   1368023..1369102 (-) Length   359 a.a.
NCBI ID   WP_315862996.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QKsg1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363023..1374102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP47_RS06830 (RHP47_06830) - 1364334..1366496 (-) 2163 WP_310840045.1 AMIN domain-containing protein -
  RHP47_RS06835 (RHP47_06835) - 1366591..1367313 (-) 723 WP_310840046.1 pilus assembly protein PilO -
  RHP47_RS06840 (RHP47_06840) - 1367310..1368011 (-) 702 WP_149819375.1 PilN domain-containing protein -
  RHP47_RS06845 (RHP47_06845) pilM 1368023..1369102 (-) 1080 WP_315862996.1 type IV pilus assembly protein PilM Machinery gene
  RHP47_RS06850 (RHP47_06850) - 1369366..1369947 (-) 582 WP_302677576.1 L,D-transpeptidase -
  RHP47_RS06855 (RHP47_06855) - 1369977..1370408 (-) 432 WP_149819381.1 hypothetical protein -
  RHP47_RS06860 (RHP47_06860) - 1370578..1371807 (-) 1230 WP_286649439.1 acetate/propionate family kinase -
  RHP47_RS06865 (RHP47_06865) comA 1371930..1373627 (+) 1698 WP_286625071.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39247.25 Da        Isoelectric Point: 4.2866

>NTDB_id=879246 RHP47_RS06845 WP_315862996.1 1368023..1369102(-) (pilM) [Thermosynechococcus sp. QKsg1]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTLEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=879246 RHP47_RS06845 WP_315862996.1 1368023..1369102(-) (pilM) [Thermosynechococcus sp. QKsg1]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTTGCCGATGCCATCCGTCAAGGGATTGAGGATAAACGCATTAAACAAAAAGAGGTGATCAGT
GCTATTCCCATGAATGAAGCCGTAATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTACGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCCCCACTGTACCTTCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTACATCAATGCC
TTTACCCAAGCCGGTTTACAACTCACCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGTATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCTATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCTAGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504