Detailed information NTG0879235

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RI103_RS17440
• Genome accession: NZ_CP134195
• Coordinates: 3796640..3797815 (+)
• Length: 391 a.a.
• NCBI ID: WP_310813152.1
• Uniprot ID: -
• Organism: Paraburkholderia sp. FT54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3791640..3802815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI103_RS17410 (RI103_17410)	-	3792133..3792756 (+)	624	WP_310813146.1	50S ribosomal protein L25/general stress protein Ctc	-
RI103_RS17415 (RI103_17415)	pth	3792908..3793510 (+)	603	WP_310813147.1	aminoacyl-tRNA hydrolase	-
RI103_RS17420 (RI103_17420)	hisC	3793682..3794761 (+)	1080	WP_310813148.1	histidinol-phosphate transaminase	-
RI103_RS17425 (RI103_17425)	-	3794834..3795091 (-)	258	WP_310813149.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RI103_RS17430 (RI103_17430)	coaD	3795157..3795672 (-)	516	WP_310813150.1	pantetheine-phosphate adenylyltransferase	-
RI103_RS17435 (RI103_17435)	rsmD	3795784..3796398 (-)	615	WP_310813151.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RI103_RS17440 (RI103_17440)	pilA	3796640..3797815 (+)	1176	WP_310813152.1	signal recognition particle-docking protein FtsY	Machinery gene
RI103_RS17445 (RI103_17445)	-	3798013..3798492 (+)	480	WP_310813153.1	VPA1267 family protein	-
RI103_RS17450 (RI103_17450)	-	3798489..3800762 (+)	2274	WP_310813154.1	AAA family ATPase	-
RI103_RS17455 (RI103_17455)	gmtY	3800759..3802252 (+)	1494	WP_310813155.1	gamma-mobile-trio recombinase GmtY	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 41630.79 Da
• Isoelectric Point: 4.8345

>NTDB_id=879235 RI103_RS17440 WP_310813152.1 3796640..3797815(+) (pilA) [Paraburkholderia sp. FT54]
MFSFFKRFKGSKESDNAPEESQTAPEGSTLEAAVQAPAPVAPAAPRPAAAPVRVETPPVATPSALEPEPDPEAFALEETV
EIVPPPLPDAGAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLYD
PQQVKTALRTLLIELLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIW
GQRNNVTVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTG
QNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG

Nucleotide

• Length: 1176 bp

>NTDB_id=879235 RI103_RS17440 WP_310813152.1 3796640..3797815(+) (pilA) [Paraburkholderia sp. FT54]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAGTCGCAAACAGCGCCAGAAGG
CTCTACGCTCGAAGCGGCCGTTCAGGCGCCTGCGCCCGTCGCGCCGGCTGCCCCGCGCCCGGCCGCTGCGCCGGTTCGCG
TCGAGACGCCGCCCGTGGCCACCCCATCCGCGCTCGAGCCCGAACCCGATCCGGAAGCATTCGCGCTCGAAGAAACGGTC
GAAATCGTCCCACCACCGCTGCCGGACGCGGGCGCGAAGCGTTCGTGGTTGACGCGACTGAAAACCGGCCTGTCGAAGAC
GAGTTCGAGCCTGACCGGCATTTTCGTCGGCACGAAGATCGACGAAGACCTGTACGAAGAGCTCGAAACCGCGCTGCTGA
TGTCGGACGCGGGCGTCGACGCCACCGAATTCCTGCTCGAAGCGCTGCGCGAAAAAGTGCGCGCCGAGCGCCTCTACGAC
CCGCAGCAGGTCAAAACGGCGCTGCGCACGCTGCTGATCGAGCTGCTCAAGCCGCTGGAAAAATCGCTCATGCTCGGCCG
CGCGCAGCCGCTCGTGATGATGATCGCCGGCGTCAACGGCGCGGGCAAGACTACCAGCATCGGTAAGCTCGCCAAGCATC
TGCAGAGTTTCGACCAGTCGGTGCTGCTTGCCGCGGGCGACACGTTCCGCGCCGCCGCCCGAGAGCAACTCGCCATCTGG
GGCCAGCGCAACAACGTGACCGTGGTATCGCAGGAAAGCGGCGATCCGGCGGCGGTGATCTTCGACGCCGTCGGCGCCGC
GCGTGCGCGCAAGATCGACGTGATGATGGCGGACACGGCCGGCCGTCTGCCGACGCAATTGCATCTCATGGAAGAACTGC
GCAAGGTGAAGCGCGTGATCGGCAAGGCGCAAGACGGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAACACCGGC
CAGAACGCGCTCGCGCAAGTAAAGGCTTTCGACGACGCGCTCGGCCTCACCGGCCTGATCGTCACCAAACTCGACGGCAC
GGCGAAGGGCGGTATTCTGGCGGCGATCGCGCGGCAGCGTCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTCG
AAGACTTGCAGCCGTTCAGCGCGGAAGAGTTTTCCGACGCGCTGCTGGGCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-169)

• SRP54-type protein, GTPase domain (SRP54) (191-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.571	100	0.575