Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX17_RS10765 Genome accession   NZ_AP024732
Coordinates   2165176..2165571 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59621     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2160176..2170571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS10740 thiE 2160638..2161279 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX17_RS10745 thiM 2161272..2162072 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX17_RS10750 thiD 2162056..2162886 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX17_RS10755 tenA 2162879..2163568 (-) 690 WP_000396077.1 thiaminase II -
  OCX17_RS10760 sceD 2164092..2164787 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX17_RS10765 ssb 2165176..2165571 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX17_RS10770 - 2165765..2166205 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX17_RS10775 fabZ 2166263..2166703 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX17_RS10780 murA 2166737..2168002 (-) 1266 WP_261921486.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX17_RS10785 - 2168113..2168346 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX17_RS10790 - 2168478..2168570 (-) 93 WP_031864518.1 hypothetical protein -
  OCX17_RS10795 - 2168908..2169312 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=87923 OCX17_RS10765 WP_000932692.1 2165176..2165571(-) (ssb) [Staphylococcus aureus strain 59621]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=87923 OCX17_RS10765 WP_000932692.1 2165176..2165571(-) (ssb) [Staphylococcus aureus strain 59621]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment