Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RHK13_RS02410 Genome accession   NZ_CP134182
Coordinates   487540..488637 (+) Length   365 a.a.
NCBI ID   WP_149817851.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY591     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482540..493637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHK13_RS02390 (RHK13_02390) - 483253..484728 (-) 1476 WP_302679781.1 right-handed parallel beta-helix repeat-containing protein -
  RHK13_RS02395 (RHK13_02395) - 484776..484973 (-) 198 WP_024125597.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  RHK13_RS02400 (RHK13_02400) - 484974..485186 (-) 213 WP_286626452.1 hypothetical protein -
  RHK13_RS02405 (RHK13_02405) pilB/pilB1 485448..487472 (+) 2025 WP_149817849.1 GspE/PulE family protein Machinery gene
  RHK13_RS02410 (RHK13_02410) pilT 487540..488637 (+) 1098 WP_149817851.1 type IV pilus twitching motility protein PilT Machinery gene
  RHK13_RS02415 (RHK13_02415) - 488674..489894 (+) 1221 WP_286626454.1 type II secretion system F family protein -
  RHK13_RS02420 (RHK13_02420) - 489903..490376 (+) 474 WP_302679782.1 J domain-containing protein -
  RHK13_RS02425 (RHK13_02425) - 490373..490645 (+) 273 WP_149817855.1 DUF3143 domain-containing protein -
  RHK13_RS02430 (RHK13_02430) - 490642..490995 (-) 354 WP_149817857.1 hypothetical protein -
  RHK13_RS02435 (RHK13_02435) - 491290..492435 (-) 1146 WP_302679783.1 cysteine desulfurase family protein -
  RHK13_RS02445 (RHK13_02445) - 492777..493148 (+) 372 WP_149817861.1 ferredoxin-thioredoxin reductase catalytic domain-containing protein -
  RHK13_RS02450 (RHK13_02450) - 493145..493348 (-) 204 WP_310829019.1 spore coat protein U domain-containing protein -
  RHK13_RS02455 (RHK13_02455) - 493317..493595 (-) 279 WP_302679784.1 spore coat protein U domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 40366.43 Da        Isoelectric Point: 6.7579

>NTDB_id=879193 RHK13_RS02410 WP_149817851.1 487540..488637(+) (pilT) [Thermosynechococcus sp. HY591]
MELMIEDLMEQVVANGGSDLHISAGLPPYIRISGKLTPTDYEPLTPEQCQRLIFSMLNNTQRKHLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPTFEQLGLPNIVREMSERPRGLILVTGPTGSGKTTTLAAMIDLINKTRAEHILTI
EDPIEFVYEPIKSLIHQRQVGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAISAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPEQQQQIRVQLSNSLVAVFSQTLVPKKNPKPGEFGRIMAQEIMVVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADYYRAGIITYEAAMAKSSRQDELQRLIGTGTPAAAAR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=879193 RHK13_RS02410 WP_149817851.1 487540..488637(+) (pilT) [Thermosynechococcus sp. HY591]
ATGGAGCTAATGATTGAAGACCTAATGGAGCAAGTGGTGGCCAATGGTGGCTCCGATTTGCATATCTCCGCTGGCTTACC
CCCCTACATTCGCATTAGCGGCAAATTAACCCCGACAGACTACGAACCCCTCACCCCAGAGCAATGCCAGCGCCTGATCT
TCAGCATGCTCAACAATACCCAACGCAAGCACCTAGAGCAAAACTGGGAGTTGGACTGCTCCTATGGTGTACGTGGCCTA
GCCCGGTTCCGCGTCAATGTGTATAAAGACCGGGGAACCTATGCTGCTTGCTTGCGAGCACTCAGTTCCAAAATTCCCAC
GTTTGAGCAGTTGGGATTGCCCAACATTGTCCGCGAAATGAGTGAGCGGCCACGGGGCTTGATTCTGGTGACTGGGCCGA
CAGGATCAGGGAAAACCACAACCTTGGCGGCGATGATTGACTTGATCAACAAAACCCGCGCTGAACATATCCTGACGATT
GAAGACCCCATTGAGTTTGTCTATGAACCCATCAAGAGCCTGATCCACCAACGGCAGGTGGGGGAAGATACCAAGAGCTT
TGCCAATGCTCTGCGGGCAGCGCTGCGGGAAGACCCCGATATTATCCTTGTGGGTGAGATGCGTGACTTGGAAACAATTC
AGCTTGCCATCTCAGCAGCGGAAACAGGGCACTTGGTCTTTGGTACCTTGCACACCAGTTCAGCTGCCCAAACCGTTGAC
CGTATGGTGGATGTGTTCCCGCCAGAGCAGCAGCAGCAAATTCGCGTCCAGTTGTCGAACTCGTTAGTGGCGGTCTTTAG
CCAAACGCTGGTTCCTAAGAAAAATCCCAAGCCCGGTGAATTTGGGCGGATTATGGCGCAAGAGATTATGGTAGTGACCC
CTGCTATCTCCAACCTGATTCGCGAAGGCAAGACCTCGCAGATTTATTCGGCAATTCAAACGGGCGGCAAGCTGGGGATG
CAGACCCTCGAAAAAGTCTTGGCCGATTATTATCGTGCGGGCATCATCACCTATGAAGCAGCAATGGCCAAGTCCTCGCG
TCAGGACGAGCTGCAACGTCTGATTGGTACGGGTACACCTGCGGCAGCAGCACGCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(36-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

55.425

93.425

0.518
  pilT Legionella pneumophila strain ERS1305867

54.203

94.521

0.512
  pilT Legionella pneumophila strain Lp02

54.203

94.521

0.512
  pilT Pseudomonas stutzeri DSM 10701

53.936

93.973

0.507
  pilT Acinetobacter baylyi ADP1

54.572

92.877

0.507
  pilT Acinetobacter baumannii strain A118

53.412

92.329

0.493
  pilT Acinetobacter nosocomialis M2

53.412

92.329

0.493
  pilT Acinetobacter baumannii D1279779

53.412

92.329

0.493
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.286

95.89

0.482
  pilT Neisseria meningitidis 8013

49.284

95.616

0.471
  pilT Neisseria gonorrhoeae MS11

49.284

95.616

0.471
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50

93.151

0.466
  pilT Vibrio cholerae strain A1552

50

93.151

0.466
  pilU Pseudomonas stutzeri DSM 10701

39.155

97.26

0.381
  pilU Acinetobacter baylyi ADP1

38.109

95.616

0.364