Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHJ13_RS10950 Genome accession   NZ_CP134179
Coordinates   2233427..2235124 (+) Length   565 a.a.
NCBI ID   WP_310800215.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TG218     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2228427..2240124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHJ13_RS10925 (RHJ13_10925) - 2228806..2229507 (-) 702 WP_302678300.1 PilN domain-containing protein -
  RHJ13_RS10930 (RHJ13_10930) pilM 2229519..2230598 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHJ13_RS10935 (RHJ13_10935) - 2230862..2231443 (-) 582 WP_310743050.1 L,D-transpeptidase -
  RHJ13_RS10940 (RHJ13_10940) - 2231473..2231904 (-) 432 WP_286625069.1 hypothetical protein -
  RHJ13_RS10945 (RHJ13_10945) - 2232075..2233304 (-) 1230 WP_310453502.1 acetate kinase -
  RHJ13_RS10950 (RHJ13_10950) comA 2233427..2235124 (+) 1698 WP_310800215.1 phospholipase D-like domain-containing protein Machinery gene
  RHJ13_RS10955 (RHJ13_10955) - 2235152..2235664 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHJ13_RS10960 (RHJ13_10960) - 2235714..2237018 (-) 1305 WP_206200183.1 NCS2 family permease -
  RHJ13_RS10965 (RHJ13_10965) - 2237413..2239134 (+) 1722 WP_310800216.1 hypothetical protein -
  RHJ13_RS10970 (RHJ13_10970) - 2239152..2239943 (+) 792 WP_206200185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63251.95 Da        Isoelectric Point: 9.0585

>NTDB_id=879155 RHJ13_RS10950 WP_310800215.1 2233427..2235124(+) (comA) [Thermosynechococcus sp. TG218]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDRRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVVVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLRRARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTLIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879155 RHJ13_RS10950 WP_310800215.1 2233427..2235124(+) (comA) [Thermosynechococcus sp. TG218]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCGGAGAATGCGGGAGCGCTACAACGACTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTGATTGATAATCGCCAAGTCATTGCCA
CTACAGCGAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGTGGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCACCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAATGGCTTGATTGGCCAAACACTACGTCGAGCACGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAAGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGCTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.117

100

0.492