Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX17_RS08005 Genome accession   NZ_AP024732
Coordinates   1653631..1654317 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59621     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648631..1659317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS07985 rpsT 1649545..1649796 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX17_RS07990 holA 1649841..1650815 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX17_RS07995 comEC 1650872..1653073 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX17_RS08000 - 1653078..1653539 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX17_RS08005 comEA 1653631..1654317 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX17_RS08010 - 1654357..1655073 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  OCX17_RS08015 rsfS 1655076..1655429 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX17_RS08020 yqeK 1655430..1656014 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX17_RS08025 nadD 1656004..1656573 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX17_RS08030 yhbY 1656576..1656866 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX17_RS08035 aroE 1656870..1657676 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX17_RS08040 yqeH 1657690..1658790 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=87912 OCX17_RS08005 WP_001793467.1 1653631..1654317(-) (comEA) [Staphylococcus aureus strain 59621]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=87912 OCX17_RS08005 WP_001793467.1 1653631..1654317(-) (comEA) [Staphylococcus aureus strain 59621]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment