Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OCX17_RS04585 Genome accession   NZ_AP024732
Coordinates   956124..957110 (+) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain 59621     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951124..962110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS04560 opp4B 951337..952299 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OCX17_RS04565 opp4C 952311..953192 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  OCX17_RS04570 trpS 953234..954223 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  OCX17_RS04575 spxA 954518..954913 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OCX17_RS04580 mecA 955284..956003 (+) 720 WP_001217728.1 adaptor protein MecA -
  OCX17_RS04585 coiA 956124..957110 (+) 987 WP_000959293.1 competence protein CoiA Machinery gene
  OCX17_RS04590 pepF 957158..958966 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OCX17_RS04595 yjbH 959426..960232 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OCX17_RS04600 - 960255..960620 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OCX17_RS04605 - 960724..961317 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  OCX17_RS04610 - 961503..961850 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=87897 OCX17_RS04585 WP_000959293.1 956124..957110(+) (coiA) [Staphylococcus aureus strain 59621]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=87897 OCX17_RS04585 WP_000959293.1 956124..957110(+) (coiA) [Staphylococcus aureus strain 59621]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment