Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OCX17_RS02630 Genome accession   NZ_AP024732
Coordinates   560043..560612 (+) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain 59621     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 555043..565612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS02605 cysE 556256..556903 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OCX17_RS02610 cysS 556887..558287 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OCX17_RS02615 - 558280..558684 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OCX17_RS02620 rlmB 558692..559438 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCX17_RS02625 - 559438..559962 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OCX17_RS02630 sigH 560043..560612 (+) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  OCX17_RS02635 rpmG 560727..560870 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OCX17_RS02640 secE 560926..561108 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OCX17_RS02645 nusG 561121..561669 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OCX17_RS02650 rplK 561850..562272 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OCX17_RS02655 rplA 562480..563172 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OCX17_RS02660 rplJ 563444..563944 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OCX17_RS02665 rplL 563987..564355 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OCX17_RS02670 - 564530..565138 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=87892 OCX17_RS02630 WP_000872877.1 560043..560612(+) (sigH) [Staphylococcus aureus strain 59621]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=87892 OCX17_RS02630 WP_000872877.1 560043..560612(+) (sigH) [Staphylococcus aureus strain 59621]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment