Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RIN70_RS08175 Genome accession   NZ_CP134147
Coordinates   1626013..1627773 (-) Length   586 a.a.
NCBI ID   WP_195623372.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621013..1632773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS08155 (RIN70_08155) manA 1621680..1622624 (-) 945 WP_003005297.1 mannose-6-phosphate isomerase, class I -
  RIN70_RS08160 (RIN70_08160) queG 1622740..1623879 (+) 1140 WP_070665525.1 tRNA epoxyqueuosine(34) reductase QueG -
  RIN70_RS08165 (RIN70_08165) - 1624178..1624804 (-) 627 WP_049487923.1 GNAT family N-acetyltransferase -
  RIN70_RS08170 (RIN70_08170) - 1624888..1625403 (-) 516 WP_070665527.1 phosphatase PAP2 family protein -
  RIN70_RS08175 (RIN70_08175) rcrQ 1626013..1627773 (-) 1761 WP_195623372.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS08180 (RIN70_08180) rcrP 1627766..1629568 (-) 1803 WP_195623371.1 ABC transporter ATP-binding protein Regulator
  RIN70_RS08185 (RIN70_08185) - 1629565..1630011 (-) 447 WP_021153785.1 MarR family winged helix-turn-helix transcriptional regulator -
  RIN70_RS08190 (RIN70_08190) - 1630147..1630557 (-) 411 WP_049507051.1 peptide deformylase -
  RIN70_RS08195 (RIN70_08195) scrK 1630805..1631704 (-) 900 WP_003016958.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65396.20 Da        Isoelectric Point: 5.5891

>NTDB_id=878883 RIN70_RS08175 WP_195623372.1 1626013..1627773(-) (rcrQ) [Streptococcus parasanguinis strain 30.8.10]
MHKTKQESSLWRQLSPYLKGFHLFFQVAILFSIVSSIITVIGPDKLKEITDTITKGMGGAIDIDKITSIALTLAILYGVG
ALVSYSSSFIISTMIQRFAERLRNAIAEKINRVPLQYFDSHEQGDTLSRVTNDVDLMTQSFNQSLVQMVSSVVLLIGSIL
MMFKTDWHLAVTAIVSIFAGFALSGIIMVKSQPLFKQQQDNLAKVSGYVEEIYSGHNVVISYNGRHQAKDHFDAINQDLY
QSMWKSQFFSGIMMPLMQFVGNFGYVMVCIVGAALTINGDITIGTIVAFMTYVRIFTQPIGQMAQGITQLQSASAAMRRV
FEFLDEEEMEDESQKIRQLETTKGHVKFEHVRFGYSPDKTIIHDFTAEAKPGQKVAIVGPTGAGKTTMVNLLMRFYDIQA
GKITIDGVDTKAMSREEVHDAFSMVLQDTWLFEGTIRENLVFNQTDISDEAVEAATRAVGVHHFIRTLPNGYDTVLDDSV
TLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQ
GNHQELMSQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=878883 RIN70_RS08175 WP_195623372.1 1626013..1627773(-) (rcrQ) [Streptococcus parasanguinis strain 30.8.10]
ATGCATAAAACAAAACAAGAATCGTCCCTTTGGAGACAACTTTCTCCCTATTTGAAGGGCTTCCACCTATTTTTCCAAGT
TGCTATCCTCTTTTCGATCGTATCGAGTATTATCACGGTTATTGGACCGGATAAGTTAAAAGAAATCACGGATACCATCA
CAAAAGGGATGGGAGGAGCCATTGATATTGACAAAATCACTTCGATTGCCCTGACTTTAGCCATCCTTTATGGAGTTGGA
GCACTGGTGTCCTACAGCAGTAGTTTCATTATCTCAACCATGATTCAGCGCTTCGCAGAACGCTTGCGCAATGCCATTGC
TGAGAAGATCAATCGTGTACCCCTCCAATATTTTGATAGCCATGAACAAGGAGATACCTTGTCTCGTGTGACCAATGACG
TGGATTTGATGACCCAATCCTTTAACCAAAGCTTGGTTCAAATGGTCTCTTCTGTTGTCTTATTGATTGGCTCCATCCTT
ATGATGTTTAAGACGGACTGGCACTTGGCGGTGACAGCGATTGTGTCCATCTTTGCAGGTTTTGCTCTTTCCGGCATTAT
TATGGTCAAGAGCCAACCTCTCTTTAAGCAACAACAAGATAATCTTGCTAAAGTTTCAGGCTATGTTGAAGAAATCTATA
GTGGACATAATGTTGTTATTTCCTACAATGGCCGTCATCAAGCCAAAGATCATTTTGATGCCATCAATCAAGATTTGTAT
CAAAGCATGTGGAAATCCCAATTCTTCTCTGGGATTATGATGCCCTTGATGCAGTTTGTAGGGAATTTTGGTTATGTCAT
GGTCTGTATCGTAGGGGCTGCCCTCACCATTAATGGAGATATTACCATTGGGACCATTGTGGCCTTTATGACCTATGTCC
GCATCTTTACCCAACCAATTGGTCAAATGGCCCAAGGAATTACCCAATTGCAATCAGCTAGTGCTGCTATGAGGCGTGTC
TTTGAATTCTTAGACGAAGAAGAAATGGAAGACGAATCCCAAAAAATACGTCAATTGGAAACAACAAAAGGTCATGTCAA
ATTTGAGCATGTTCGTTTTGGCTATTCACCAGACAAGACTATTATCCATGACTTTACAGCTGAAGCCAAACCGGGGCAAA
AAGTAGCCATTGTTGGTCCAACAGGTGCTGGTAAGACCACCATGGTCAATCTCTTGATGCGTTTTTACGACATTCAAGCT
GGTAAAATTACCATCGATGGTGTGGATACTAAGGCCATGAGTCGCGAAGAAGTTCATGATGCTTTTTCGATGGTCTTACA
AGATACCTGGCTCTTTGAAGGGACCATTCGGGAAAACTTAGTCTTTAATCAAACCGATATTTCAGATGAAGCAGTCGAAG
CGGCAACCCGAGCGGTTGGGGTCCATCACTTTATTCGGACCTTGCCGAATGGCTATGATACTGTATTAGATGATTCAGTG
ACCTTGTCCGTTGGTCAAAAGCAACTTTTGACCATTGCGCGTGCCCTCTTGAAGGATGCTCCGCTCCTTATCTTGGATGA
AGCAACCTCATCTGTCGATACCCGTACAGAAGAGTTGATTCAAAAAGCCATGGACAAACTCATGGAAGGCCGGACCTCCT
TTGTCATTGCCCATCGCTTGTCCACTATCCGTAATGCGGATCTGATTCTCGTGATGAAAGATGGAAATATTATCGAGCAA
GGCAACCACCAAGAACTCATGAGCCAAAATGGCTTCTATGCTGATCTCTATAATAGCCAATTCACAGAAGAAGTAGCATG
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-510)

ABC transporter transmembrane region (ABC_membrane)

(27-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

76.592

99.147

0.759