Detailed information NTG0878874

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RIN70_RS05680
• Genome accession: NZ_CP134147
• Coordinates: 1096903..1098135 (-)
• Length: 410 a.a.
• NCBI ID: WP_045759487.1
• Uniprot ID: A0A0F3H4I3
• Organism: Streptococcus parasanguinis strain 30.8.10
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1091903..1103135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIN70_RS05645 (RIN70_05645)	-	1092105..1092557 (-)	453	WP_134974371.1	hypothetical protein	-
RIN70_RS05650 (RIN70_05650)	-	1092705..1093133 (-)	429	WP_313790430.1	hypothetical protein	-
RIN70_RS05655 (RIN70_05655)	rplL	1093293..1093661 (-)	369	WP_003001622.1	50S ribosomal protein L7/L12	-
RIN70_RS05660 (RIN70_05660)	rplJ	1093736..1094236 (-)	501	WP_313790431.1	50S ribosomal protein L10	-
RIN70_RS05665 (RIN70_05665)	-	1094471..1095268 (-)	798	WP_254728201.1	formate/nitrite transporter family protein	-
RIN70_RS05670 (RIN70_05670)	-	1095436..1096140 (-)	705	WP_049522721.1	glucosaminidase domain-containing protein	-
RIN70_RS05675 (RIN70_05675)	yihA	1096289..1096891 (-)	603	WP_303471132.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
RIN70_RS05680 (RIN70_05680)	clpX	1096903..1098135 (-)	1233	WP_045759487.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RIN70_RS05685 (RIN70_05685)	-	1098344..1098853 (-)	510	WP_313790432.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45649.13 Da
• Isoelectric Point: 4.3940

>NTDB_id=878874 RIN70_RS05680 WP_045759487.1 1096903..1098135(-) (clpX) [Streptococcus parasanguinis strain 30.8.10]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQEDVKLVRITKEAVD
GTEKPVLETA

Nucleotide

• Length: 1233 bp

>NTDB_id=878874 RIN70_RS05680 WP_045759487.1 1096903..1098135(-) (clpX) [Streptococcus parasanguinis strain 30.8.10]
ATGCCAACGAATCAAAACAATGATATGATGGTTTATTGCTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAATGCGTTTATCTGTAATGAATGTGTAGAGTTAGCTCAAGAAATCATTCGCGAGGAGCTTGCTGAAGAAG
TACTTGCTGACCTTAGCGAAGTTCCAAAACCAATCGAATTGCTCAATATCTTGAACCACTACGTCATCGGTCAAGATCGG
GCTAAACGTGCCCTTGCAGTAGCGGTATACAACCACTACAAACGCATTAACTTCCACGATACACGCGAAGATGAGACGGA
TGTTGAATTGCAAAAATCAAACATCCTCATGATTGGACCTACTGGTTCAGGAAAGACCTTCTTGGCCCAAACCTTGGCTC
GTAGCCTGAATGTTCCATTTGCTATTGCAGATGCAACAGCCTTAACTGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAT
ATTCTCTTAAAACTTCTTCAGGCAGCGGATTTCAATATTGAGCGTGCAGAACGTGGCATTATTTATGTCGATGAAATCGA
TAAGATTGCTAAGAAAAGTGAAAATGTCTCGATCACACGTGACGTTTCTGGTGAAGGGGTGCAACAAGCTCTCTTGAAGA
TCATCGAAGGGACCGTCGCTAGTGTTCCACCACAAGGGGGACGCAAACACCCTCAACAAGAGATGATCCAAGTGGATACC
AAGAATATTCTCTTCATCGTAGGAGGAGCCTTTGACGGAATCGAAGAAATTGTTAAGCAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAATAACAAAGCCATCGATGAATCCAGCTCTTACATGCAAGAAATTGTAGCAGAAGATATTCAAAAAT
TTGGAATTATCCCAGAATTGATTGGACGTCTTCCAGTCTTTGCGGCTCTTGAGCAATTGACGGTTGACGACCTTGTCCGT
ATTCTAAAAGAGCCACGCAATGCCTTGGTAAAACAATACCAAACCTTGCTCTCTTATGATAATGTTGAATTGGAATTTGA
CGATGAAGCCCTTCAAGAGATTGCGAATAAAGCTATTGAAAGAAAGACTGGAGCTCGTGGTCTTCGTTCGATTATTGAAG
AAACCATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAGATGTAAAACTTGTCCGAATCACAAAAGAAGCTGTTGAC
GGAACAGAAAAACCAGTTCTTGAAACAGCCTAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

3D structure

• AlphaFold DB: A0A0F3H4I3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.098	100	0.861
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.711	98.049	0.566