Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX16_RS11045 Genome accession   NZ_AP024730
Coordinates   2207655..2208050 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59574     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2202655..2213050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS11020 thiE 2203117..2203758 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX16_RS11025 thiM 2203751..2204551 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX16_RS11030 thiD 2204535..2205365 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX16_RS11035 tenA 2205358..2206047 (-) 690 WP_000396077.1 thiaminase II -
  OCX16_RS11040 sceD 2206571..2207266 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX16_RS11045 ssb 2207655..2208050 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX16_RS11050 - 2208244..2208684 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX16_RS11055 fabZ 2208742..2209182 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX16_RS11060 murA 2209216..2210481 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX16_RS11065 - 2210592..2210825 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX16_RS11070 - 2210957..2211049 (-) 93 WP_031864518.1 hypothetical protein -
  OCX16_RS11075 - 2211387..2211791 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=87880 OCX16_RS11045 WP_000932692.1 2207655..2208050(-) (ssb) [Staphylococcus aureus strain 59574]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=87880 OCX16_RS11045 WP_000932692.1 2207655..2208050(-) (ssb) [Staphylococcus aureus strain 59574]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment