Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RI108_RS16610 Genome accession   NZ_CP134081
Coordinates   3664707..3665342 (-) Length   211 a.a.
NCBI ID   WP_043193308.1    Uniprot ID   A0AAJ6LXL4
Organism   Pseudomonas coleopterorum strain DJ13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3659707..3670342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI108_RS16580 (RI108_16580) - 3660654..3661244 (-) 591 WP_310791546.1 nucleotidyltransferase family protein -
  RI108_RS16585 (RI108_16585) murB 3661298..3662320 (-) 1023 WP_310791547.1 UDP-N-acetylmuramate dehydrogenase -
  RI108_RS16590 (RI108_16590) kdsB 3662317..3663081 (-) 765 WP_049861531.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RI108_RS16595 (RI108_16595) - 3663078..3663263 (-) 186 WP_049861532.1 Trm112 family protein -
  RI108_RS16600 (RI108_16600) lpxK 3663287..3664282 (-) 996 WP_310791548.1 tetraacyldisaccharide 4'-kinase -
  RI108_RS16605 (RI108_16605) - 3664282..3664710 (-) 429 WP_056843368.1 biopolymer transporter ExbD -
  RI108_RS16610 (RI108_16610) exbB 3664707..3665342 (-) 636 WP_043193308.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RI108_RS16615 (RI108_16615) comA 3665423..3667654 (-) 2232 WP_310791549.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RI108_RS16620 (RI108_16620) - 3667802..3668314 (+) 513 WP_310791550.1 DUF2062 domain-containing protein -
  RI108_RS16625 (RI108_16625) - 3668492..3669790 (+) 1299 WP_049861537.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.97 Da        Isoelectric Point: 7.4061

>NTDB_id=878753 RI108_RS16610 WP_043193308.1 3664707..3665342(-) (exbB) [Pseudomonas coleopterorum strain DJ13]
MWELVKSGGWMMLPIIVSSIVALAIIAERLWTLRASRVSPAHLVGQVWRWKKDKQLSKEKLKELRADSPLGEILAAGLAN
SRHGREIMKESIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVIGMIEIFGSFTGGAVSGNPSVMAGGISKALVTTA
SGLIVAIPALFFHRLLQRRIDELVVGMEQEAIKLVEVVQGDREVDLAEEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=878753 RI108_RS16610 WP_043193308.1 3664707..3665342(-) (exbB) [Pseudomonas coleopterorum strain DJ13]
GTGTGGGAATTGGTTAAGTCTGGCGGCTGGATGATGTTGCCAATCATAGTGAGCTCCATCGTTGCGCTGGCCATCATCGC
CGAGCGCTTGTGGACCTTGCGTGCCAGCCGCGTCTCGCCCGCCCATCTGGTCGGCCAGGTCTGGCGCTGGAAGAAAGACA
AGCAGTTGAGCAAGGAAAAGCTCAAGGAGCTGCGCGCCGACTCGCCCCTCGGTGAAATTCTCGCCGCTGGCCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAGGAAAGCATCGAGGAAGCCGCCAGCCGCGTCATCCACGAGCTGGAACGCTATAT
CAGCACCCTGGGCACCATTGCCGCGATGGCCCCACTGCTCGGCCTGCTGGGCACGGTCATCGGCATGATCGAGATCTTCG
GCTCGTTCACCGGCGGCGCCGTGAGCGGCAACCCCAGCGTCATGGCCGGCGGGATCTCCAAGGCGCTGGTCACCACCGCG
TCCGGCCTGATCGTCGCGATCCCGGCGCTGTTCTTCCATCGCCTGCTGCAGCGCCGTATCGATGAGTTGGTAGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTCGTGCAGGGTGATCGCGAGGTCGACCTGGCCGAGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.777

100

0.768