Detailed information NTG0878754

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: RI108_RS16615
• Genome accession: NZ_CP134081
• Coordinates: 3665423..3667654 (-)
• Length: 743 a.a.
• NCBI ID: WP_310791549.1
• Uniprot ID: A0AAJ6MST1
• Organism: Pseudomonas coleopterorum strain DJ13
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3660423..3672654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI108_RS16580 (RI108_16580)	-	3660654..3661244 (-)	591	WP_310791546.1	nucleotidyltransferase family protein	-
RI108_RS16585 (RI108_16585)	murB	3661298..3662320 (-)	1023	WP_310791547.1	UDP-N-acetylmuramate dehydrogenase	-
RI108_RS16590 (RI108_16590)	kdsB	3662317..3663081 (-)	765	WP_049861531.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
RI108_RS16595 (RI108_16595)	-	3663078..3663263 (-)	186	WP_049861532.1	Trm112 family protein	-
RI108_RS16600 (RI108_16600)	lpxK	3663287..3664282 (-)	996	WP_310791548.1	tetraacyldisaccharide 4'-kinase	-
RI108_RS16605 (RI108_16605)	-	3664282..3664710 (-)	429	WP_056843368.1	biopolymer transporter ExbD	-
RI108_RS16610 (RI108_16610)	exbB	3664707..3665342 (-)	636	WP_043193308.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
RI108_RS16615 (RI108_16615)	comA	3665423..3667654 (-)	2232	WP_310791549.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RI108_RS16620 (RI108_16620)	-	3667802..3668314 (+)	513	WP_310791550.1	DUF2062 domain-containing protein	-
RI108_RS16625 (RI108_16625)	-	3668492..3669790 (+)	1299	WP_049861537.1	serine/threonine protein kinase	-
RI108_RS16630 (RI108_16630)	-	3669783..3670562 (+)	780	WP_056843371.1	VacJ family lipoprotein	-
RI108_RS16635 (RI108_16635)	-	3670665..3671594 (-)	930	WP_090356726.1	lipid A biosynthesis lauroyl acyltransferase	-
RI108_RS16640 (RI108_16640)	minC	3671733..3672458 (+)	726	WP_310791551.1	septum site-determining protein MinC	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80215.21 Da
• Isoelectric Point: 10.9430

>NTDB_id=878754 RI108_RS16615 WP_310791549.1 3665423..3667654(-) (comA) [Pseudomonas coleopterorum strain DJ13]
MRTAMLALATGMVCLRGLPALPSLGWLMGMAAVASLSLVARRWHFGLFLLGLCWACLHAHWAMNDQLARALDGQTLWLEG
EVVGLPAVNGSTVRFELTDAWSRRAQLPSRLRLAWYGGPPVASGERWRLAVKLKRPRALVNPGGFDARAWALAKGFGATG
SVKAGERVRTARLAWRDGLRQRLLAVDSQQQGGTLAALLLGDGSAVSRQQWEVLQATGTVHLLVISGQHVGLLAGLVYGL
VALLAKVGLWPARWPWLPCACALAFAAALSYGLLAGFQVPVRRACIMIGLVLMWRLRFRHLGVWWPLLLAFTLVLLVDPL
VSLQPGFWLSFTAVGVLLLTFSGRLGGWRWWQAWTRAQCCVAVGLLPVMVALALPVSVSGPLVNLLAVPWISLVVLPVAM
AGAVLLPVPWIGESLLWLAGGALRGLFQWLTWSAEWSPPWLPPGVSPEVWLVLAIGILLLLLPAGVPLRWLGVPMAGLLL
FSPRQAPPAGQADIWVLDVGQGLAVLVRTAHHQVLYDTGPGLSEVDAGASVVVPSLVALGVRRLDAMIISHAHLDHSGGA
GSVRRRLPVTQTLAGEPDALPVAWQAQPCKPGRSWEWDGVRFMLWRWPSAVPGNPASCVLWVEANGERLLLAGDIDASAE
RALLASGLPPQAHWLQAPHHGSKTSSSKPFLEAVQPHAALISRGHDNTFGHPHADVLARYQALGITPHDTAEAGALRIQL
GTHGPVQRQRDQRRFWRDAAVKP

Nucleotide

• Length: 2232 bp

>NTDB_id=878754 RI108_RS16615 WP_310791549.1 3665423..3667654(-) (comA) [Pseudomonas coleopterorum strain DJ13]
ATGCGCACGGCGATGTTGGCGCTGGCGACAGGGATGGTGTGTCTGCGTGGCTTGCCGGCCTTGCCGTCGCTGGGCTGGTT
GATGGGCATGGCGGCGGTTGCATCGCTATCGCTGGTGGCGCGCCGCTGGCACTTCGGGCTGTTTCTGCTGGGGTTGTGCT
GGGCATGCCTGCATGCCCACTGGGCGATGAATGATCAACTGGCGCGGGCGCTCGATGGGCAGACCCTGTGGCTCGAAGGC
GAAGTGGTCGGCCTGCCGGCGGTGAACGGCAGCACCGTGCGCTTCGAGCTGACGGATGCCTGGTCGCGCCGTGCGCAGTT
GCCGTCACGGCTGCGTCTGGCCTGGTACGGCGGCCCGCCGGTGGCCAGCGGTGAACGGTGGCGCCTGGCGGTAAAGCTCA
AACGCCCGCGTGCGTTGGTCAATCCCGGCGGTTTCGACGCCCGGGCCTGGGCCTTGGCCAAAGGGTTTGGCGCCACGGGC
AGCGTCAAGGCCGGCGAGCGGGTGCGTACAGCCCGCCTGGCCTGGCGCGATGGGCTGCGCCAGCGTCTGCTGGCGGTCGA
CAGCCAACAACAGGGCGGTACCCTGGCCGCGTTGCTGCTGGGTGACGGTTCCGCGGTCTCGCGCCAGCAGTGGGAAGTGC
TCCAGGCCACCGGCACCGTGCATCTGTTGGTCATTTCCGGCCAGCATGTCGGCCTGCTGGCGGGGCTGGTGTATGGACTG
GTGGCTTTGTTGGCCAAAGTCGGTCTGTGGCCGGCGCGGTGGCCGTGGTTACCCTGCGCGTGCGCCTTGGCGTTCGCCGC
CGCGTTGTCATACGGATTGCTGGCCGGCTTCCAGGTGCCGGTACGTCGGGCCTGCATCATGATCGGCCTGGTGCTGATGT
GGCGGCTGCGCTTTCGCCACCTGGGCGTGTGGTGGCCGCTGCTGCTGGCGTTCACCCTGGTGTTGCTGGTCGACCCGTTG
GTGAGCCTGCAGCCCGGCTTCTGGCTATCATTCACTGCCGTGGGGGTGTTGCTGCTGACGTTCTCAGGGCGCCTCGGGGG
GTGGCGCTGGTGGCAGGCCTGGACGCGTGCGCAGTGCTGCGTAGCCGTCGGGCTGCTGCCGGTGATGGTGGCCCTGGCCC
TGCCGGTCAGTGTCAGCGGGCCGCTGGTCAATTTGCTCGCCGTACCCTGGATCAGCCTCGTGGTGCTGCCGGTGGCCATG
GCCGGCGCCGTGCTGCTACCAGTACCCTGGATCGGCGAAAGCCTGTTGTGGCTGGCCGGCGGGGCATTGCGCGGGCTGTT
TCAATGGCTGACCTGGAGCGCCGAATGGAGCCCTCCCTGGCTGCCGCCCGGCGTGTCGCCAGAAGTATGGCTGGTGCTCG
CGATCGGCATCCTGCTGCTGTTGCTGCCAGCGGGCGTGCCGTTGCGCTGGCTGGGCGTGCCGATGGCCGGGCTGCTGCTG
TTCAGCCCGCGTCAGGCGCCGCCCGCGGGCCAGGCCGATATCTGGGTGCTGGACGTTGGTCAGGGCCTGGCTGTGCTGGT
ACGCACTGCCCACCACCAAGTGCTCTATGACACCGGTCCTGGGCTGAGCGAAGTCGATGCCGGCGCCAGTGTCGTCGTGC
CCAGCCTGGTCGCGCTGGGCGTACGGCGCCTGGATGCGATGATCATCAGTCATGCCCACCTCGATCACTCAGGCGGTGCA
GGCTCCGTGCGGCGACGCCTGCCCGTCACCCAGACATTGGCCGGCGAACCCGACGCACTGCCGGTCGCATGGCAGGCGCA
GCCCTGCAAGCCCGGTCGTAGTTGGGAGTGGGATGGGGTCAGGTTCATGCTGTGGCGCTGGCCATCGGCGGTGCCCGGCA
ATCCTGCTTCCTGCGTGCTCTGGGTCGAAGCCAATGGCGAGCGGCTGTTGCTCGCAGGCGACATCGACGCGTCGGCCGAA
AGGGCCCTGCTCGCCAGTGGCCTGCCGCCTCAGGCGCATTGGTTGCAGGCGCCGCATCATGGTAGCAAGACCTCATCGAG
CAAGCCGTTCCTGGAAGCGGTGCAGCCTCACGCCGCGCTGATATCGCGTGGCCACGACAACACCTTTGGTCATCCACACG
CCGACGTACTGGCGCGTTACCAGGCCTTGGGCATCACCCCTCACGACACGGCCGAGGCGGGCGCATTGCGCATCCAGCTG
GGGACCCATGGTCCCGTGCAGCGGCAGCGCGACCAGCGACGTTTCTGGCGTGACGCGGCCGTTAAGCCCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-462)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.11	96.77	0.572
comA	Ralstonia pseudosolanacearum GMI1000	34.268	100	0.362