Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RI106_RS13060 Genome accession   NZ_CP134071
Coordinates   2668495..2668890 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 4233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2663495..2673890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS13030 (RI106_13030) - 2664755..2665159 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RI106_RS13035 (RI106_13035) - 2665495..2665587 (+) 93 WP_031929694.1 hypothetical protein -
  RI106_RS13040 (RI106_13040) - 2665719..2665952 (+) 234 WP_000384523.1 DUF1146 family protein -
  RI106_RS13045 (RI106_13045) murA 2666063..2667328 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RI106_RS13050 (RI106_13050) fabZ 2667362..2667802 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RI106_RS13055 (RI106_13055) - 2667861..2668301 (-) 441 WP_000846746.1 YwpF-like family protein -
  RI106_RS13060 (RI106_13060) ssb 2668495..2668890 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RI106_RS13065 (RI106_13065) sceD 2669279..2669974 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  RI106_RS13070 (RI106_13070) tenA 2670498..2671187 (+) 690 WP_045173472.1 thiaminase II -
  RI106_RS13075 (RI106_13075) thiD 2671180..2672010 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RI106_RS13080 (RI106_13080) thiM 2671994..2672785 (+) 792 WP_045173475.1 hydroxyethylthiazole kinase -
  RI106_RS13085 (RI106_13085) thiE 2672787..2673428 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=878700 RI106_RS13060 WP_000932694.1 2668495..2668890(+) (ssb) [Staphylococcus aureus strain 4233]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=878700 RI106_RS13060 WP_000932694.1 2668495..2668890(+) (ssb) [Staphylococcus aureus strain 4233]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992