Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RI106_RS07285 Genome accession   NZ_CP134071
Coordinates   1475531..1476100 (-) Length   189 a.a.
NCBI ID   WP_045174125.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 4233     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470531..1481100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS07245 (RI106_07245) - 1471005..1471613 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  RI106_RS07250 (RI106_07250) rplL 1471788..1472156 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RI106_RS07255 (RI106_07255) rplJ 1472199..1472699 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  RI106_RS07260 (RI106_07260) rplA 1472971..1473663 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  RI106_RS07265 (RI106_07265) rplK 1473871..1474293 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  RI106_RS07270 (RI106_07270) nusG 1474474..1475022 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RI106_RS07275 (RI106_07275) secE 1475035..1475217 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RI106_RS07280 (RI106_07280) rpmG 1475273..1475416 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  RI106_RS07285 (RI106_07285) sigH 1475531..1476100 (-) 570 WP_045174125.1 sigma-70 family RNA polymerase sigma factor Regulator
  RI106_RS07290 (RI106_07290) - 1476181..1476705 (-) 525 WP_000664738.1 NYN domain-containing protein -
  RI106_RS07295 (RI106_07295) rlmB 1476705..1477451 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RI106_RS07300 (RI106_07300) - 1477459..1477863 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RI106_RS07305 (RI106_07305) cysS 1477856..1479256 (-) 1401 WP_310745889.1 cysteine--tRNA ligase -
  RI106_RS07310 (RI106_07310) cysE 1479240..1479887 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.91 Da        Isoelectric Point: 9.5047

>NTDB_id=878690 RI106_RS07285 WP_045174125.1 1475531..1476100(-) (sigH) [Staphylococcus aureus strain 4233]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=878690 RI106_RS07285 WP_045174125.1 1475531..1476100(-) (sigH) [Staphylococcus aureus strain 4233]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979