Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX16_RS08290 Genome accession   NZ_AP024730
Coordinates   1694909..1695595 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59574     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689909..1700595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS08270 rpsT 1690823..1691074 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX16_RS08275 holA 1691119..1692093 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX16_RS08280 comEC 1692150..1694351 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX16_RS08285 - 1694356..1694817 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX16_RS08290 comEA 1694909..1695595 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX16_RS08295 - 1695635..1696351 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OCX16_RS08300 rsfS 1696354..1696707 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX16_RS08305 yqeK 1696708..1697292 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX16_RS08310 nadD 1697282..1697851 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX16_RS08315 yhbY 1697854..1698144 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX16_RS08320 aroE 1698148..1698954 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX16_RS08325 yqeH 1698968..1700068 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=87869 OCX16_RS08290 WP_001793467.1 1694909..1695595(-) (comEA) [Staphylococcus aureus strain 59574]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=87869 OCX16_RS08290 WP_001793467.1 1694909..1695595(-) (comEA) [Staphylococcus aureus strain 59574]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment