Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RIF20_RS08715 Genome accession   NZ_CP134068
Coordinates   1756746..1757732 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751746..1762732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS08690 (RIF20_08690) - 1752006..1752353 (-) 348 WP_001242102.1 hypothetical protein -
  RIF20_RS08695 (RIF20_08695) - 1752539..1753132 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  RIF20_RS08700 (RIF20_08700) - 1753236..1753601 (+) 366 WP_000214069.1 truncated hemoglobin YjbI -
  RIF20_RS08705 (RIF20_08705) yjbH 1753624..1754430 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RIF20_RS08710 (RIF20_08710) pepF 1754890..1756698 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RIF20_RS08715 (RIF20_08715) coiA 1756746..1757732 (-) 987 WP_000959289.1 competence protein CoiA Machinery gene
  RIF20_RS08720 (RIF20_08720) mecA 1757853..1758572 (-) 720 WP_001217728.1 adaptor protein MecA -
  RIF20_RS08725 (RIF20_08725) - 1759179..1760825 (+) 1647 WP_000277718.1 IS1182 family transposase -
  RIF20_RS08730 (RIF20_08730) spxA 1760889..1761284 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RIF20_RS08735 (RIF20_08735) trpS 1761579..1762568 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=878625 RIF20_RS08715 WP_000959289.1 1756746..1757732(-) (coiA) [Staphylococcus aureus strain 63]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=878625 RIF20_RS08715 WP_000959289.1 1756746..1757732(-) (coiA) [Staphylococcus aureus strain 63]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979