Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RIF20_RS08580 Genome accession   NZ_CP134068
Coordinates   1726668..1727237 (+) Length   189 a.a.
NCBI ID   WP_000287265.1    Uniprot ID   A0A7U7EXU5
Organism   Staphylococcus aureus strain 63     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721668..1732237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS08545 (RIF20_08545) - 1722934..1723140 (-) 207 WP_310790931.1 lactococcin 972 family bacteriocin -
  RIF20_RS08550 (RIF20_08550) - 1723164..1723265 (-) 102 WP_031763719.1 hypothetical protein -
  RIF20_RS13330 - 1723804..1723881 (-) 78 WP_099112139.1 putative holin-like toxin -
  RIF20_RS08560 (RIF20_08560) - 1724181..1724783 (-) 603 WP_001033865.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RIF20_RS08565 (RIF20_08565) - 1724798..1724974 (-) 177 WP_000214898.1 YkvS family protein -
  RIF20_RS08570 (RIF20_08570) - 1725173..1726159 (+) 987 WP_000668818.1 lipoate--protein ligase -
  RIF20_RS08575 (RIF20_08575) - 1726240..1726458 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  RIF20_RS08580 (RIF20_08580) comK/comK1 1726668..1727237 (+) 570 WP_000287265.1 competence protein ComK Regulator
  RIF20_RS08595 (RIF20_08595) - 1727724..1729235 (-) 1512 WP_000414185.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  RIF20_RS08600 (RIF20_08600) - 1729374..1730732 (-) 1359 WP_000021865.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22601.83 Da        Isoelectric Point: 9.6091

>NTDB_id=878624 RIF20_RS08580 WP_000287265.1 1726668..1727237(+) (comK/comK1) [Staphylococcus aureus strain 63]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=878624 RIF20_RS08580 WP_000287265.1 1726668..1727237(+) (comK/comK1) [Staphylococcus aureus strain 63]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

100

100

1
  comK/comK1 Staphylococcus aureus N315

100

100

1