Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RIF20_RS05655 Genome accession   NZ_CP134068
Coordinates   1105148..1105834 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100148..1110834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS05620 (RIF20_05620) yqeH 1100675..1101775 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  RIF20_RS05625 (RIF20_05625) aroE 1101789..1102595 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  RIF20_RS05630 (RIF20_05630) yhbY 1102599..1102889 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  RIF20_RS05635 (RIF20_05635) nadD 1102892..1103461 (+) 570 WP_310790924.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RIF20_RS05640 (RIF20_05640) yqeK 1103451..1104035 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RIF20_RS05645 (RIF20_05645) rsfS 1104036..1104389 (+) 354 WP_001088020.1 ribosome silencing factor -
  RIF20_RS05650 (RIF20_05650) - 1104392..1105108 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  RIF20_RS05655 (RIF20_05655) comEA 1105148..1105834 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  RIF20_RS05660 (RIF20_05660) - 1105926..1106387 (+) 462 WP_000439693.1 ComE operon protein 2 -
  RIF20_RS05665 (RIF20_05665) comEC 1106392..1108593 (+) 2202 WP_180366519.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RIF20_RS05670 (RIF20_05670) holA 1108650..1109624 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  RIF20_RS05675 (RIF20_05675) rpsT 1109669..1109920 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=878611 RIF20_RS05655 WP_001788928.1 1105148..1105834(+) (comEA) [Staphylococcus aureus strain 63]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=878611 RIF20_RS05655 WP_001788928.1 1105148..1105834(+) (comEA) [Staphylococcus aureus strain 63]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969