Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | RI633_RS01270 | Genome accession | NZ_CP134060 |
| Coordinates | 272644..273234 (+) | Length | 196 a.a. |
| NCBI ID | WP_000157690.1 | Uniprot ID | A0A366AJW1 |
| Organism | Vibrio cholerae strain CMUL 009 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 267644..278234
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RI633_RS01255 (RI633_01255) | - | 268441..270918 (-) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
| RI633_RS01260 (RI633_01260) | pilM | 271061..272077 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| RI633_RS01265 (RI633_01265) | pilN | 272067..272651 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| RI633_RS01270 (RI633_01270) | pilO | 272644..273234 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| RI633_RS01275 (RI633_01275) | pilP | 273224..273742 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| RI633_RS01280 (RI633_01280) | pilQ | 273768..275483 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| RI633_RS01285 (RI633_01285) | aroK | 275670..276194 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| RI633_RS01290 (RI633_01290) | aroB | 276222..277307 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22877.27 Da Isoelectric Point: 4.4169
>NTDB_id=878509 RI633_RS01270 WP_000157690.1 272644..273234(+) (pilO) [Vibrio cholerae strain CMUL 009]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=878509 RI633_RS01270 WP_000157690.1 272644..273234(+) (pilO) [Vibrio cholerae strain CMUL 009]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilO | Vibrio campbellii strain DS40M4 |
71.958 |
96.429 |
0.694 |