Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RGB74_RS15605 | Genome accession | NZ_CP134049 |
| Coordinates | 3099607..3101748 (-) | Length | 713 a.a. |
| NCBI ID | WP_310760217.1 | Uniprot ID | - |
| Organism | Bacillus sp. NEB1478 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3094607..3106748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGB74_RS15585 (RGB74_15585) | - | 3094927..3095208 (-) | 282 | WP_310760213.1 | hypothetical protein | - |
| RGB74_RS15590 (RGB74_15590) | - | 3095294..3097699 (-) | 2406 | WP_310760214.1 | penicillin acylase family protein | - |
| RGB74_RS15595 (RGB74_15595) | - | 3097908..3098093 (+) | 186 | WP_310760215.1 | hypothetical protein | - |
| RGB74_RS15600 (RGB74_15600) | - | 3098280..3098912 (-) | 633 | WP_310760216.1 | hypothetical protein | - |
| RGB74_RS20150 | - | 3099331..3099414 (+) | 84 | WP_226536613.1 | putative holin-like toxin | - |
| RGB74_RS15605 (RGB74_15605) | clpC | 3099607..3101748 (-) | 2142 | WP_310760217.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| RGB74_RS15610 (RGB74_15610) | - | 3101937..3102473 (-) | 537 | WP_310760218.1 | BsuPI-related putative proteinase inhibitor | - |
| RGB74_RS15615 (RGB74_15615) | - | 3102623..3103966 (+) | 1344 | WP_310762903.1 | FAD-linked oxidase C-terminal domain-containing protein | - |
| RGB74_RS15620 (RGB74_15620) | - | 3104031..3104351 (+) | 321 | WP_310257353.1 | YbjQ family protein | - |
| RGB74_RS15625 (RGB74_15625) | - | 3104348..3104581 (+) | 234 | WP_310760219.1 | hypothetical protein | - |
| RGB74_RS15630 (RGB74_15630) | - | 3104655..3104813 (-) | 159 | WP_310760220.1 | hypothetical protein | - |
| RGB74_RS15635 (RGB74_15635) | - | 3104843..3106531 (-) | 1689 | WP_310760221.1 | HAMP domain-containing methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 713 a.a. Molecular weight: 80037.76 Da Isoelectric Point: 5.6753
>NTDB_id=878385 RGB74_RS15605 WP_310760217.1 3099607..3101748(-) (clpC) [Bacillus sp. NEB1478]
MRCEQCEVNPATIQMSISMNKEKKQFVLCSNCYHKVKQEMNSGGGVNMNFSSFDDIFQQMMNGQAFNDQHIEKQEQTQKG
KRSGGFLDKFGRNLSDAAKAGIIDPVIGRDDEIRRVIEILNRRTKNNPVLIGEPGVGKTAIAEGLATKIVEGNVPAKLLN
KEVYLLDVASLVADTGVRGQFEERMKQLIAELQKRKNVILFVDEVHQIVGAGSAEGSMDAGNILKPALARGELQMVGATT
LKEYRQIEKDAALERRFQPVIVNEPTADEAFEILKGLAPRYEEYHQVKFTEEALMACVQLSQRYIQDRFLPDKAIDLMDE
AGSKSNLKYITIEKSTVEERLEQIVKEKEKAATDENYELAARLRQEELVLEENLKSQENDKEAAIVQVEDIQHIVETKTG
IPVRKLQHDEQSKMKELAEKLSSQVIGQTEAVEKVAKAIRRSRAGLKAKKRPIGSFLFVGPTGVGKTELTKTLAKELFGD
EDSMIRLDMSEYMEKHAVSKLIGSPPGYVGHEEAGQLTELVRRKPYSILLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGR
TVSFKDTVIIMTSNAGAGAKQTKKLGFNQEQVEKETQILDSLGGYFKPEFLNRFDSIVQFQSLKEEHLVKIVDLMLEELS
EQLKEQNISISVTSAVKQKLAKLGYHPAFGARPLRRIIQEQIEDKIADVLLDEEALEKLVVNVVDGQIVVKKA
MRCEQCEVNPATIQMSISMNKEKKQFVLCSNCYHKVKQEMNSGGGVNMNFSSFDDIFQQMMNGQAFNDQHIEKQEQTQKG
KRSGGFLDKFGRNLSDAAKAGIIDPVIGRDDEIRRVIEILNRRTKNNPVLIGEPGVGKTAIAEGLATKIVEGNVPAKLLN
KEVYLLDVASLVADTGVRGQFEERMKQLIAELQKRKNVILFVDEVHQIVGAGSAEGSMDAGNILKPALARGELQMVGATT
LKEYRQIEKDAALERRFQPVIVNEPTADEAFEILKGLAPRYEEYHQVKFTEEALMACVQLSQRYIQDRFLPDKAIDLMDE
AGSKSNLKYITIEKSTVEERLEQIVKEKEKAATDENYELAARLRQEELVLEENLKSQENDKEAAIVQVEDIQHIVETKTG
IPVRKLQHDEQSKMKELAEKLSSQVIGQTEAVEKVAKAIRRSRAGLKAKKRPIGSFLFVGPTGVGKTELTKTLAKELFGD
EDSMIRLDMSEYMEKHAVSKLIGSPPGYVGHEEAGQLTELVRRKPYSILLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGR
TVSFKDTVIIMTSNAGAGAKQTKKLGFNQEQVEKETQILDSLGGYFKPEFLNRFDSIVQFQSLKEEHLVKIVDLMLEELS
EQLKEQNISISVTSAVKQKLAKLGYHPAFGARPLRRIIQEQIEDKIADVLLDEEALEKLVVNVVDGQIVVKKA
Nucleotide
Download Length: 2142 bp
>NTDB_id=878385 RGB74_RS15605 WP_310760217.1 3099607..3101748(-) (clpC) [Bacillus sp. NEB1478]
ATGCGTTGTGAACAATGTGAAGTTAATCCTGCTACGATCCAGATGAGTATTTCAATGAACAAAGAGAAGAAGCAATTTGT
ACTTTGCTCTAATTGCTATCATAAAGTAAAACAAGAAATGAACAGCGGAGGAGGAGTAAACATGAACTTTTCTTCTTTCG
ATGATATATTCCAACAAATGATGAATGGTCAAGCATTTAATGACCAGCACATTGAAAAGCAGGAACAAACTCAAAAAGGA
AAACGCAGCGGAGGCTTTTTAGATAAATTTGGACGTAACTTATCAGACGCGGCAAAAGCAGGAATTATTGATCCAGTCAT
CGGCAGAGATGACGAAATTCGAAGAGTGATTGAAATTTTAAACAGACGTACGAAAAACAACCCGGTCTTAATCGGGGAAC
CAGGTGTAGGTAAGACAGCGATAGCAGAAGGTCTGGCAACAAAAATCGTTGAAGGCAATGTGCCAGCTAAACTGCTGAAC
AAAGAAGTGTACTTACTTGATGTGGCATCACTTGTTGCAGATACTGGTGTAAGAGGCCAGTTTGAAGAACGAATGAAACA
ACTAATCGCTGAACTGCAAAAGAGAAAGAACGTCATTTTATTCGTTGATGAAGTCCACCAGATCGTTGGTGCAGGATCTG
CTGAAGGGTCAATGGATGCAGGTAATATTTTGAAACCGGCACTTGCTCGCGGTGAACTTCAAATGGTTGGTGCGACTACA
TTAAAAGAATATAGACAGATCGAAAAAGATGCTGCATTAGAAAGACGATTCCAGCCGGTTATTGTTAACGAACCGACTGC
GGATGAAGCCTTTGAAATTTTAAAAGGGCTGGCACCTCGATACGAAGAATACCATCAAGTGAAGTTTACAGAAGAAGCTT
TGATGGCTTGTGTTCAGTTATCACAACGTTACATCCAAGATCGATTCTTGCCTGACAAAGCAATTGATTTAATGGATGAA
GCAGGTTCAAAGAGCAATCTTAAATACATTACAATTGAAAAATCAACTGTAGAAGAGCGTCTAGAACAGATCGTTAAGGA
AAAAGAAAAAGCTGCAACAGATGAAAACTATGAACTAGCAGCCAGACTTCGCCAAGAAGAGCTTGTGCTGGAAGAAAACT
TAAAATCACAAGAAAATGATAAAGAGGCAGCAATTGTTCAAGTGGAAGACATTCAACATATTGTCGAAACGAAAACGGGA
ATTCCGGTTCGTAAATTGCAGCATGATGAACAATCTAAAATGAAAGAACTTGCCGAAAAATTATCATCACAAGTCATTGG
TCAGACAGAAGCGGTTGAAAAGGTGGCAAAAGCGATCCGCAGAAGCCGTGCAGGCCTAAAAGCGAAAAAACGTCCGATCG
GATCGTTCTTGTTTGTCGGACCGACAGGTGTAGGTAAGACAGAACTTACGAAAACTCTAGCAAAAGAACTTTTCGGTGAT
GAAGACAGCATGATCCGTTTAGACATGAGCGAATATATGGAAAAACACGCCGTTTCCAAGCTTATTGGTTCACCTCCAGG
ATATGTTGGACACGAAGAAGCGGGACAGCTGACTGAACTGGTTCGCCGTAAGCCATACAGCATTTTGTTATTAGACGAAA
TCGAAAAGGCTCATCCTGATGTACAGCATATGTTCCTTCAAATCATGGAAGATGGGCGGTTAACTGACAGCCAAGGACGT
ACAGTAAGTTTTAAGGATACCGTTATTATTATGACAAGTAATGCAGGCGCTGGTGCTAAACAAACTAAGAAACTCGGATT
CAACCAAGAACAAGTTGAGAAGGAAACACAAATTCTTGATTCGTTGGGAGGCTATTTCAAGCCAGAGTTTCTCAACCGTT
TTGACAGCATCGTTCAGTTTCAGTCGCTAAAAGAAGAACATCTTGTGAAGATTGTAGACTTAATGCTCGAGGAGCTTTCA
GAGCAATTGAAAGAGCAAAACATCTCAATCTCTGTAACTTCTGCTGTAAAACAAAAGTTGGCGAAATTAGGCTACCACCC
AGCATTTGGGGCAAGACCATTACGCCGTATCATTCAAGAACAGATCGAGGATAAAATAGCGGATGTTTTATTAGATGAAG
AAGCATTAGAAAAACTAGTGGTTAATGTAGTAGATGGACAGATTGTGGTTAAGAAAGCTTAA
ATGCGTTGTGAACAATGTGAAGTTAATCCTGCTACGATCCAGATGAGTATTTCAATGAACAAAGAGAAGAAGCAATTTGT
ACTTTGCTCTAATTGCTATCATAAAGTAAAACAAGAAATGAACAGCGGAGGAGGAGTAAACATGAACTTTTCTTCTTTCG
ATGATATATTCCAACAAATGATGAATGGTCAAGCATTTAATGACCAGCACATTGAAAAGCAGGAACAAACTCAAAAAGGA
AAACGCAGCGGAGGCTTTTTAGATAAATTTGGACGTAACTTATCAGACGCGGCAAAAGCAGGAATTATTGATCCAGTCAT
CGGCAGAGATGACGAAATTCGAAGAGTGATTGAAATTTTAAACAGACGTACGAAAAACAACCCGGTCTTAATCGGGGAAC
CAGGTGTAGGTAAGACAGCGATAGCAGAAGGTCTGGCAACAAAAATCGTTGAAGGCAATGTGCCAGCTAAACTGCTGAAC
AAAGAAGTGTACTTACTTGATGTGGCATCACTTGTTGCAGATACTGGTGTAAGAGGCCAGTTTGAAGAACGAATGAAACA
ACTAATCGCTGAACTGCAAAAGAGAAAGAACGTCATTTTATTCGTTGATGAAGTCCACCAGATCGTTGGTGCAGGATCTG
CTGAAGGGTCAATGGATGCAGGTAATATTTTGAAACCGGCACTTGCTCGCGGTGAACTTCAAATGGTTGGTGCGACTACA
TTAAAAGAATATAGACAGATCGAAAAAGATGCTGCATTAGAAAGACGATTCCAGCCGGTTATTGTTAACGAACCGACTGC
GGATGAAGCCTTTGAAATTTTAAAAGGGCTGGCACCTCGATACGAAGAATACCATCAAGTGAAGTTTACAGAAGAAGCTT
TGATGGCTTGTGTTCAGTTATCACAACGTTACATCCAAGATCGATTCTTGCCTGACAAAGCAATTGATTTAATGGATGAA
GCAGGTTCAAAGAGCAATCTTAAATACATTACAATTGAAAAATCAACTGTAGAAGAGCGTCTAGAACAGATCGTTAAGGA
AAAAGAAAAAGCTGCAACAGATGAAAACTATGAACTAGCAGCCAGACTTCGCCAAGAAGAGCTTGTGCTGGAAGAAAACT
TAAAATCACAAGAAAATGATAAAGAGGCAGCAATTGTTCAAGTGGAAGACATTCAACATATTGTCGAAACGAAAACGGGA
ATTCCGGTTCGTAAATTGCAGCATGATGAACAATCTAAAATGAAAGAACTTGCCGAAAAATTATCATCACAAGTCATTGG
TCAGACAGAAGCGGTTGAAAAGGTGGCAAAAGCGATCCGCAGAAGCCGTGCAGGCCTAAAAGCGAAAAAACGTCCGATCG
GATCGTTCTTGTTTGTCGGACCGACAGGTGTAGGTAAGACAGAACTTACGAAAACTCTAGCAAAAGAACTTTTCGGTGAT
GAAGACAGCATGATCCGTTTAGACATGAGCGAATATATGGAAAAACACGCCGTTTCCAAGCTTATTGGTTCACCTCCAGG
ATATGTTGGACACGAAGAAGCGGGACAGCTGACTGAACTGGTTCGCCGTAAGCCATACAGCATTTTGTTATTAGACGAAA
TCGAAAAGGCTCATCCTGATGTACAGCATATGTTCCTTCAAATCATGGAAGATGGGCGGTTAACTGACAGCCAAGGACGT
ACAGTAAGTTTTAAGGATACCGTTATTATTATGACAAGTAATGCAGGCGCTGGTGCTAAACAAACTAAGAAACTCGGATT
CAACCAAGAACAAGTTGAGAAGGAAACACAAATTCTTGATTCGTTGGGAGGCTATTTCAAGCCAGAGTTTCTCAACCGTT
TTGACAGCATCGTTCAGTTTCAGTCGCTAAAAGAAGAACATCTTGTGAAGATTGTAGACTTAATGCTCGAGGAGCTTTCA
GAGCAATTGAAAGAGCAAAACATCTCAATCTCTGTAACTTCTGCTGTAAAACAAAAGTTGGCGAAATTAGGCTACCACCC
AGCATTTGGGGCAAGACCATTACGCCGTATCATTCAAGAACAGATCGAGGATAAAATAGCGGATGTTTTATTAGATGAAG
AAGCATTAGAAAAACTAGTGGTTAATGTAGTAGATGGACAGATTGTGGTTAAGAAAGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
58.333 |
100 |
0.599 |
| clpE | Streptococcus mutans UA159 |
56.528 |
100 |
0.589 |
| clpE | Streptococcus pneumoniae D39 |
54.656 |
100 |
0.568 |
| clpE | Streptococcus pneumoniae R6 |
54.656 |
100 |
0.568 |
| clpE | Streptococcus pneumoniae Rx1 |
54.656 |
100 |
0.568 |
| clpE | Streptococcus pneumoniae TIGR4 |
54.521 |
100 |
0.567 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
54.729 |
90.463 |
0.495 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.417 |
90.042 |
0.418 |
| clpC | Streptococcus thermophilus LMD-9 |
47.52 |
87.658 |
0.417 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.36 |
87.658 |
0.415 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.457 |
89.06 |
0.414 |
| clpC | Streptococcus mutans UA159 |
47.565 |
86.396 |
0.411 |
| clpC | Streptococcus pneumoniae D39 |
46.709 |
87.377 |
0.408 |
| clpC | Streptococcus pneumoniae Rx1 |
46.709 |
87.377 |
0.408 |
| clpA | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
42.339 |
85.133 |
0.36 |