Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RGB74_RS08040 Genome accession   NZ_CP134049
Coordinates   1645536..1646330 (+) Length   264 a.a.
NCBI ID   WP_310762821.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640536..1651330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS08025 (RGB74_08025) ahrC 1641694..1642143 (+) 450 WP_310762458.1 transcriptional regulator AhrC/ArgR -
  RGB74_RS08030 (RGB74_08030) recN 1642169..1643860 (+) 1692 WP_310762459.1 DNA repair protein RecN Machinery gene
  RGB74_RS08035 (RGB74_08035) spoIVB 1643991..1645277 (+) 1287 WP_310762460.1 SpoIVB peptidase -
  RGB74_RS08040 (RGB74_08040) spo0A 1645536..1646330 (+) 795 WP_310762821.1 sporulation transcription factor Spo0A Regulator
  RGB74_RS08045 (RGB74_08045) - 1646393..1646629 (-) 237 WP_310762461.1 DUF2627 domain-containing protein -
  RGB74_RS08050 (RGB74_08050) - 1646779..1648839 (+) 2061 WP_310762462.1 sigma-54-dependent Fis family transcriptional regulator -
  RGB74_RS08055 (RGB74_08055) yqiS 1648970..1649872 (+) 903 WP_310762463.1 phosphate butyryltransferase -
  RGB74_RS08060 (RGB74_08060) bcd 1649885..1650985 (+) 1101 WP_310762464.1 branched-chain amino acid dehydrogenase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29378.77 Da        Isoelectric Point: 6.3462

>NTDB_id=878373 RGB74_RS08040 WP_310762821.1 1645536..1646330(+) (spo0A) [Bacillus sp. NEB1478]
MQNIKVCLADDNRELISLLREYLSSQDDMDVIGVAYNGQECLSVLEGKNPDVLVLDIIMPHLDGLAVLEKIRSSDDLPQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLANQIRQICGSEKSSVKRASNNVRSNFQTINKPRNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTSSRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRIEHKAG

Nucleotide


Download         Length: 795 bp        

>NTDB_id=878373 RGB74_RS08040 WP_310762821.1 1645536..1646330(+) (spo0A) [Bacillus sp. NEB1478]
GTGCAAAACATTAAAGTATGTTTAGCTGATGATAACCGCGAGTTAATTAGTTTATTGAGGGAATATCTCTCAAGCCAAGA
TGATATGGATGTAATTGGTGTAGCTTATAATGGTCAGGAGTGCTTATCTGTTTTAGAAGGAAAAAATCCTGATGTACTCG
TACTTGATATTATCATGCCGCACTTAGATGGTTTAGCTGTATTGGAGAAAATTAGATCCAGTGATGATCTGCCTCAACCT
AATGTAATTATGCTTACAGCATTCGGACAGGAAGATGTAACGAAGAAGGCTGTGGATCTTGGTGCTTCTTACTTTATCCT
TAAACCTTTTGATATGGAAAATTTAGCAAACCAGATTCGTCAGATTTGCGGATCCGAAAAATCCAGCGTTAAACGTGCAT
CAAACAATGTTCGCAGCAATTTCCAAACAATTAATAAACCGCGTAACTTAGACGCAAGTATCACAAGTATTATTCATGAA
ATCGGAGTGCCTGCACATATTAAAGGATATATGTATTTACGCGAAGCCATTTCAATGGTTTACAACGACATTGAACTTCT
AGGTTCGATAACGAAAGTCTTGTACCCGGACATTGCTAAGAAATTCAACACTACATCTAGCCGTGTTGAACGAGCAATCC
GTCATGCGATAGAAGTTGCATGGAGCAGAGGGAACATCGACAGTATTTCATCGCTATTTGGCTACACGGTTTCCATGTCT
AAAGCGAAACCAACGAATTCAGAGTTCATCGCAATGGTCGCTGATAAATTAAGAATCGAACACAAGGCTGGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.451

100

0.811