Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RGB74_RS08030 Genome accession   NZ_CP134049
Coordinates   1642169..1643860 (+) Length   563 a.a.
NCBI ID   WP_310762459.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637169..1648860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS08010 (RGB74_08010) - 1637975..1638571 (+) 597 WP_310762455.1 hypothetical protein -
  RGB74_RS08015 (RGB74_08015) dxs 1638592..1640490 (+) 1899 WP_310762456.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RGB74_RS08020 (RGB74_08020) - 1640487..1641305 (+) 819 WP_310762457.1 TlyA family RNA methyltransferase -
  RGB74_RS08025 (RGB74_08025) ahrC 1641694..1642143 (+) 450 WP_310762458.1 transcriptional regulator AhrC/ArgR -
  RGB74_RS08030 (RGB74_08030) recN 1642169..1643860 (+) 1692 WP_310762459.1 DNA repair protein RecN Machinery gene
  RGB74_RS08035 (RGB74_08035) spoIVB 1643991..1645277 (+) 1287 WP_310762460.1 SpoIVB peptidase -
  RGB74_RS08040 (RGB74_08040) spo0A 1645536..1646330 (+) 795 WP_310762821.1 sporulation transcription factor Spo0A Regulator
  RGB74_RS08045 (RGB74_08045) - 1646393..1646629 (-) 237 WP_310762461.1 DUF2627 domain-containing protein -
  RGB74_RS08050 (RGB74_08050) - 1646779..1648839 (+) 2061 WP_310762462.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63570.63 Da        Isoelectric Point: 5.3769

>NTDB_id=878372 RGB74_RS08030 WP_310762459.1 1642169..1643860(+) (recN) [Bacillus sp. NEB1478]
MLAELSIRNFAIIDELSVSFNKGLTVLTGETGAGKSIIIDAIGLLIGGRGSTEFVRYGTPKAEIEGLFHIHSEHRVYEKC
SEVGINITDEMVVLKRDITDSGKSICRVNGKLVTLSILKEIGQALVDIHGQHETQYLMQPDKHLFLLDSFGDRDFKEDLV
KYENAFKEFKDINKQLSELSRNEQEIAQRIDLLEYQLEEITGANLLTDEDDKLEDEKKMLSNFESIHDHLQDAYYSLYGE
GKGLELVSKALEEFSQVAALDESLKTDEEQFGSSYYVLEELTYKIRDMFDSLEYNPDRLNNIEMRLDEISKLKRKYGNSV
KEIILYGEKISKELQLIQNKDNHIEELKSKQIKVLSKLTVSGKKLTKKRTETAKKLKNSIQQQLKELYMEKTEFEVIISH
VDENQFLKTGMDNVEFYISPNQGEPLKPLSKVASGGELSRVILALKTIFSEKQGITAIIFDEVDTGVSGRVAQAIAEKIY
RVSVGSQVLCISHLPQVAAMADTHLHITKTAAQGRTVTKVLSLKTEEKVNEIGRMISGVEITDLTKQHAKELLHLAESIK
KSS

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=878372 RGB74_RS08030 WP_310762459.1 1642169..1643860(+) (recN) [Bacillus sp. NEB1478]
TTGCTGGCAGAATTAAGTATTCGTAATTTTGCTATAATTGATGAATTGAGTGTGTCATTTAATAAAGGTCTTACCGTACT
AACTGGTGAAACAGGTGCAGGAAAATCCATAATTATTGATGCGATCGGTCTTTTGATCGGTGGTAGAGGCTCAACTGAAT
TTGTCCGTTATGGAACACCGAAAGCGGAAATTGAAGGTTTGTTTCATATCCATTCTGAACATCGTGTTTATGAGAAATGC
AGCGAAGTTGGAATAAATATTACTGATGAGATGGTTGTTTTAAAAAGGGATATTACCGATAGCGGGAAGAGTATATGCAG
AGTAAATGGAAAGCTTGTAACACTGTCCATTTTAAAAGAAATAGGACAAGCTTTAGTTGATATTCATGGGCAGCATGAGA
CACAGTATTTAATGCAGCCTGATAAACATCTATTTTTGTTAGACAGTTTTGGCGATCGGGATTTTAAAGAAGATTTAGTT
AAATACGAAAATGCATTTAAGGAATTTAAAGACATTAATAAGCAATTATCTGAACTATCGAGAAATGAACAAGAAATCGC
TCAGCGGATCGATCTTTTAGAATATCAGTTAGAAGAGATAACAGGAGCCAATTTATTAACGGATGAAGATGATAAACTGG
AAGATGAAAAAAAGATGCTTTCAAATTTCGAGAGTATCCACGACCATCTTCAAGATGCTTATTACAGTTTATATGGAGAA
GGAAAAGGACTTGAGCTGGTTTCTAAAGCACTGGAAGAATTTTCGCAAGTTGCTGCTTTAGATGAGTCATTAAAAACAGA
TGAGGAGCAGTTCGGAAGCAGTTACTATGTTCTTGAGGAGCTCACTTACAAGATACGTGATATGTTTGATTCTTTAGAAT
ATAATCCAGATCGGCTTAACAATATTGAAATGCGATTAGATGAAATAAGCAAGCTGAAACGAAAATATGGGAATTCTGTT
AAAGAAATCATTCTTTACGGTGAAAAGATTTCTAAAGAACTTCAACTTATTCAAAATAAAGACAATCATATTGAGGAACT
TAAGAGCAAACAGATAAAAGTTCTTTCTAAGTTAACTGTCTCTGGAAAGAAGTTAACAAAAAAACGTACAGAAACTGCAA
AAAAATTAAAAAATTCGATTCAGCAGCAGCTGAAAGAACTCTACATGGAAAAAACTGAATTTGAGGTAATCATCAGTCAT
GTTGATGAGAATCAATTTTTAAAAACAGGAATGGATAATGTTGAATTTTATATTTCCCCCAACCAGGGAGAACCACTGAA
GCCTTTATCCAAAGTAGCTTCCGGCGGAGAATTGTCACGTGTGATTTTAGCTTTGAAAACCATTTTTTCTGAAAAACAGG
GCATAACTGCAATCATATTTGATGAGGTAGATACGGGTGTTAGCGGCAGAGTAGCACAAGCAATTGCCGAGAAAATTTAT
CGAGTATCAGTTGGATCTCAAGTTTTATGTATCAGCCACCTTCCACAAGTTGCAGCGATGGCAGACACACATCTTCATAT
TACTAAAACTGCTGCACAAGGCAGAACTGTTACGAAAGTACTTTCACTAAAAACGGAAGAAAAGGTAAATGAAATAGGAA
GAATGATATCAGGCGTTGAAATAACAGACTTAACAAAACAACATGCAAAAGAACTTCTCCATCTGGCCGAATCCATAAAA
AAATCATCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.13

100

0.563