Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX18_RS10755 Genome accession   NZ_AP024728
Coordinates   2169611..2170006 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59553     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2164611..2175006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX18_RS10730 thiE 2165073..2165714 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX18_RS10735 thiM 2165707..2166507 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX18_RS10740 thiD 2166491..2167321 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX18_RS10745 tenA 2167314..2168003 (-) 690 WP_000396077.1 thiaminase II -
  OCX18_RS10750 sceD 2168527..2169222 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX18_RS10755 ssb 2169611..2170006 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX18_RS10760 - 2170200..2170640 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX18_RS10765 fabZ 2170698..2171138 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX18_RS10770 murA 2171172..2172437 (-) 1266 WP_261921486.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX18_RS10775 - 2172548..2172781 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX18_RS10780 - 2172913..2173005 (-) 93 WP_031864518.1 hypothetical protein -
  OCX18_RS10785 - 2173343..2173747 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=87837 OCX18_RS10755 WP_000932692.1 2169611..2170006(-) (ssb) [Staphylococcus aureus strain 59553]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=87837 OCX18_RS10755 WP_000932692.1 2169611..2170006(-) (ssb) [Staphylococcus aureus strain 59553]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment