Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RGB74_RS03270 Genome accession   NZ_CP134049
Coordinates   708837..709568 (+) Length   243 a.a.
NCBI ID   WP_310761569.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 703837..714568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS03250 (RGB74_03250) - 704466..705524 (+) 1059 WP_310761565.1 MraY family glycosyltransferase -
  RGB74_RS03255 (RGB74_03255) - 705561..706571 (-) 1011 WP_310761566.1 LCP family protein -
  RGB74_RS03260 (RGB74_03260) - 706728..707363 (-) 636 WP_310761567.1 YigZ family protein -
  RGB74_RS03265 (RGB74_03265) degS 707676..708824 (+) 1149 WP_310761568.1 histidine kinase Regulator
  RGB74_RS03270 (RGB74_03270) degU 708837..709568 (+) 732 WP_310761569.1 response regulator transcription factor Regulator
  RGB74_RS03275 (RGB74_03275) - 709653..710573 (+) 921 WP_310761570.1 ROK family protein -
  RGB74_RS03280 (RGB74_03280) - 710714..711562 (+) 849 WP_310761571.1 DegV family protein -
  RGB74_RS03285 (RGB74_03285) - 711614..713110 (+) 1497 WP_310761572.1 DEAD/DEAH box helicase -
  RGB74_RS03290 (RGB74_03290) - 713107..713817 (+) 711 WP_310761573.1 ComF family protein -
  RGB74_RS03295 (RGB74_03295) - 713900..714295 (+) 396 WP_310761574.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27432.00 Da        Isoelectric Point: 5.6263

>NTDB_id=878360 RGB74_RS03270 WP_310761569.1 708837..709568(+) (degU) [Bacillus sp. NEB1478]
MNTINVYESNASAPEKTRIAIIDDHRLFREGVKRILDMEDQFSVVAEGDDGSEAEEIVRDHNPDVVLMDINMPNVNGVEA
TRRLVEKSPDTKVIILSIHDDETYVSHAVQTGASGYLLKEMDADSLIEAVRVVADGGAYLHPKITHNLLNEFRRLSTSNK
TQQNKAGFVEVEYRKPLHILTRRECEVLQLLADGRSNRTIGEELYISEKTVKNHVSNILQKMNVNDRTQAVVEAIKNGWV
KVR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=878360 RGB74_RS03270 WP_310761569.1 708837..709568(+) (degU) [Bacillus sp. NEB1478]
ATGAATACAATTAATGTGTACGAAAGCAACGCCTCAGCACCTGAGAAAACAAGGATTGCAATCATTGATGACCACAGATT
GTTCCGTGAAGGTGTAAAGCGCATATTAGATATGGAAGATCAATTTTCTGTAGTGGCAGAAGGCGATGATGGATCAGAAG
CAGAAGAAATCGTGCGTGATCATAACCCAGATGTTGTTTTGATGGATATTAACATGCCAAATGTTAACGGCGTTGAAGCG
ACTCGCCGTTTAGTGGAAAAGTCTCCTGACACGAAAGTTATCATCCTTTCGATCCACGATGATGAAACATATGTATCCCA
TGCGGTTCAAACCGGTGCCTCCGGTTATCTGCTAAAAGAAATGGACGCAGATTCCTTGATCGAAGCTGTACGAGTTGTAG
CTGATGGAGGTGCTTATCTGCATCCGAAAATTACACACAACTTGCTGAACGAGTTCCGCCGTTTATCTACTTCAAACAAG
ACACAGCAGAACAAAGCTGGTTTTGTAGAAGTGGAATACCGCAAGCCATTGCACATCTTAACGCGTCGTGAATGTGAAGT
TCTTCAGCTATTAGCTGACGGACGAAGCAACCGTACGATTGGTGAAGAGCTGTATATCAGTGAAAAAACGGTTAAAAACC
ATGTAAGTAACATTCTGCAAAAAATGAACGTAAACGACCGTACACAAGCGGTAGTAGAAGCGATCAAAAACGGCTGGGTA
AAGGTGCGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(179-234)

Response regulator receiver domain (Response_reg)

(19-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

75.439

93.827

0.708