Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RE424_RS11270 Genome accession   NZ_CP134047
Coordinates   2221925..2222320 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2216925..2227320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS11245 thiE 2217387..2218028 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  RE424_RS11250 thiM 2218030..2218821 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  RE424_RS11255 thiD 2218805..2219635 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RE424_RS11260 tenA 2219628..2220317 (-) 690 WP_000396067.1 thiaminase II -
  RE424_RS11265 sceD 2220841..2221536 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  RE424_RS11270 ssb 2221925..2222320 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RE424_RS11275 - 2222514..2222954 (+) 441 WP_000846746.1 YwpF-like family protein -
  RE424_RS11280 fabZ 2223012..2223452 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RE424_RS11285 murA 2223486..2224751 (-) 1266 WP_103254231.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RE424_RS11290 - 2224862..2225095 (-) 234 WP_000384523.1 DUF1146 family protein -
  RE424_RS11295 - 2225227..2225319 (-) 93 WP_031929694.1 hypothetical protein -
  RE424_RS11300 - 2225714..2226118 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=878347 RE424_RS11270 WP_000932694.1 2221925..2222320(-) (ssb) [Staphylococcus aureus strain 21SAU_AGRO3]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=878347 RE424_RS11270 WP_000932694.1 2221925..2222320(-) (ssb) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992