Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RE424_RS05255 Genome accession   NZ_CP134047
Coordinates   1057573..1058142 (-) Length   189 a.a.
NCBI ID   WP_023913640.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052573..1063142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS05235 - 1054078..1055436 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  RE424_RS05240 - 1055575..1057086 (+) 1512 WP_031866180.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  RE424_RS05255 comK/comK1 1057573..1058142 (-) 570 WP_023913640.1 competence protein ComK Regulator
  RE424_RS05260 - 1058352..1058570 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  RE424_RS05265 - 1058651..1059637 (-) 987 WP_000668815.1 lipoate--protein ligase -
  RE424_RS05270 - 1059836..1060012 (+) 177 WP_000214898.1 YkvS family protein -
  RE424_RS05275 - 1060027..1060629 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RE424_RS05280 - 1060947..1061009 (+) 63 WP_228764722.1 hypothetical protein -
  RE424_RS05285 - 1061548..1061649 (+) 102 WP_001790623.1 hypothetical protein -
  RE424_RS05290 - 1061659..1061931 (+) 273 WP_072470685.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22575.75 Da        Isoelectric Point: 9.6091

>NTDB_id=878321 RE424_RS05255 WP_023913640.1 1057573..1058142(-) (comK/comK1) [Staphylococcus aureus strain 21SAU_AGRO3]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSSFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=878321 RE424_RS05255 WP_023913640.1 1057573..1058142(-) (comK/comK1) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTCATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995