Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RE424_RS02595 Genome accession   NZ_CP134047
Coordinates   551122..551691 (+) Length   189 a.a.
NCBI ID   WP_310790856.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 546122..556691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS02570 cysE 547335..547982 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RE424_RS02575 cysS 547966..549366 (+) 1401 WP_023913383.1 cysteine--tRNA ligase -
  RE424_RS02580 - 549359..549763 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RE424_RS02585 rlmB 549771..550517 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RE424_RS02590 - 550517..551041 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RE424_RS02595 sigH 551122..551691 (+) 570 WP_310790856.1 RNA polymerase sigma factor Regulator
  RE424_RS02600 rpmG 551806..551949 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RE424_RS02605 secE 552005..552187 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RE424_RS02610 nusG 552200..552748 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RE424_RS02615 rplK 552929..553351 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RE424_RS02620 rplA 553559..554251 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RE424_RS02625 rplJ 554523..555023 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RE424_RS02630 rplL 555066..555434 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RE424_RS02635 - 555609..556217 (+) 609 WP_023913388.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23014.88 Da        Isoelectric Point: 9.4170

>NTDB_id=878315 RE424_RS02595 WP_310790856.1 551122..551691(+) (sigH) [Staphylococcus aureus strain 21SAU_AGRO3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMV

Nucleotide


Download         Length: 570 bp        

>NTDB_id=878315 RE424_RS02595 WP_310790856.1 551122..551691(+) (sigH) [Staphylococcus aureus strain 21SAU_AGRO3]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGGTTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979