Detailed information NTG0878169

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RDV49_RS06720
• Genome accession: NZ_CP133988
• Coordinates: 1422512..1423744 (+)
• Length: 410 a.a.
• NCBI ID: WP_003007442.1
• Uniprot ID: A0AAX4AVF4
• Organism: Streptococcus parasanguinis strain B-1756
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1417512..1428744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV49_RS06715 (RDV49_06715)	-	1421794..1422303 (+)	510	WP_003007444.1	dihydrofolate reductase	-
RDV49_RS06720 (RDV49_06720)	clpX	1422512..1423744 (+)	1233	WP_003007442.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RDV49_RS06725 (RDV49_06725)	yihA	1423756..1424358 (+)	603	WP_003007440.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
RDV49_RS06730 (RDV49_06730)	-	1424508..1425212 (+)	705	WP_003007439.1	glucosaminidase domain-containing protein	-
RDV49_RS06735 (RDV49_06735)	-	1425372..1426169 (+)	798	WP_003007437.1	formate/nitrite transporter family protein	-
RDV49_RS06740 (RDV49_06740)	rplJ	1426404..1426904 (+)	501	WP_003001722.1	50S ribosomal protein L10	-
RDV49_RS06745 (RDV49_06745)	rplL	1426980..1427348 (+)	369	WP_003001622.1	50S ribosomal protein L7/L12	-
RDV49_RS06750 (RDV49_06750)	-	1427509..1427952 (+)	444	WP_003007434.1	hypothetical protein	-
RDV49_RS06755 (RDV49_06755)	-	1428103..1428555 (+)	453	WP_003007432.1	hypothetical protein	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45662.17 Da
• Isoelectric Point: 4.4171

>NTDB_id=878169 RDV49_RS06720 WP_003007442.1 1422512..1423744(+) (clpX) [Streptococcus parasanguinis strain B-1756]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=878169 RDV49_RS06720 WP_003007442.1 1422512..1423744(+) (clpX) [Streptococcus parasanguinis strain B-1756]
ATGCCAACGAATCAAAATAATGATATGATGGTTTATTGTTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAACGCGTTTATCTGTAATGAATGTGTCGAGTTAGCCCAAGAAATTATTCGTGAGGAGCTAGCAGAAGAAG
TTCTTGCAGACCTTAGCGAAGTTCCAAAACCAATCGAATTGCTCAATATTTTGAACCACTATGTGATCGGTCAAGATCGT
GCCAAACGTGCTCTTGCTGTAGCAGTATACAACCACTACAAACGCATCAACTTCCACGATACGCGCGAAGACGAGACAGA
TGTTGAATTGCAAAAATCAAACATCCTCATGATTGGTCCTACTGGTTCAGGTAAGACTTTCTTAGCCCAAACCTTAGCAC
GTAGCTTGAATGTCCCATTTGCCATTGCAGATGCAACAGCCTTGACAGAAGCTGGTTATGTGGGTGAAGACGTTGAAAAT
ATTCTTTTGAAACTTCTTCAAGCGGCTGATTTCAACATCGAACGTGCTGAACGAGGAATTATCTATGTCGATGAAATCGA
TAAGATCGCTAAGAAGAGTGAAAATGTTTCTATCACACGTGACGTTTCTGGTGAAGGGGTACAACAAGCCCTCTTGAAGA
TTATCGAAGGAACTGTCGCTAGTGTCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGATCCAAGTGGATACC
AAGAATATTCTCTTCATCGTGGGTGGGGCTTTTGACGGGATCGAAGAAATTGTCAAACAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAACAATAAAGCTATTGATGAATCAAGCTCTTACATGCAAGAAATCGTGGCAGAAGATATTCAAAAAT
TCGGGATTATCCCAGAATTGATCGGACGTCTTCCAGTCTTTGCTGCTCTTGAGCAATTGACAGTTGACGACCTTGTCCGT
ATCTTGAAAGAGCCACGCAATGCCTTGGTAAAACAATATCAAACCTTGCTCTCTTATGATAATGTTGAATTGGAATTCGA
TGATGAAGCCCTTCAAGAGATTGCCAATAAAGCCATCGAAAGAAAAACAGGAGCTCGTGGACTTCGTTCGATTATCGAAG
AAACGATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAAATGTCAAACTTGTTCGAATTACAAAAGAAGCTGTAGAT
GGAACTGAAAAACCAATTCTCGAAACAGCCTAG

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.098	100	0.861
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.463	98.049	0.563