Detailed information NTG0878138

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RDV49_RS00775
• Genome accession: NZ_CP133988
• Coordinates: 171791..173920 (-)
• Length: 709 a.a.
• NCBI ID: WP_003009968.1
• Uniprot ID: A0AAX4AXS3
• Organism: Streptococcus parasanguinis strain B-1756
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 166791..178920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV49_RS00750 (RDV49_00750)	eeP	167836..169095 (-)	1260	WP_003009974.1	RIP metalloprotease RseP	Regulator
RDV49_RS00755 (RDV49_00755)	-	169132..169935 (-)	804	WP_023919527.1	phosphatidate cytidylyltransferase	-
RDV49_RS00760 (RDV49_00760)	-	169945..170694 (-)	750	WP_003009971.1	isoprenyl transferase	-
RDV49_RS00765 (RDV49_00765)	yajC	170850..171176 (-)	327	WP_003009970.1	preprotein translocase subunit YajC	-
RDV49_RS00770 (RDV49_00770)	-	171321..171566 (-)	246	WP_003009969.1	hypothetical protein	-
RDV49_RS00775 (RDV49_00775)	clpC	171791..173920 (-)	2130	WP_003009968.1	AAA family ATPase	Regulator
RDV49_RS00780 (RDV49_00780)	-	174217..174516 (-)	300	WP_003009967.1	hypothetical protein	-
RDV49_RS00785 (RDV49_00785)	-	174535..174915 (-)	381	WP_003009966.1	hypothetical protein	-
RDV49_RS00790 (RDV49_00790)	-	174894..176504 (-)	1611	WP_003009965.1	hypothetical protein	-
RDV49_RS00795 (RDV49_00795)	-	176494..176889 (-)	396	WP_003009964.1	DUF1310 family protein	-
RDV49_RS00800 (RDV49_00800)	-	177076..177474 (-)	399	WP_003009963.1	DUF1310 family protein	-
RDV49_RS00805 (RDV49_00805)	-	177582..178346 (-)	765	WP_003009962.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 709 a.a.
• Molecular weight: 78742.72 Da
• Isoelectric Point: 4.7979

>NTDB_id=878138 RDV49_RS00775 WP_003009968.1 171791..173920(-) (clpC) [Streptococcus parasanguinis strain B-1756]
MNNNFNNMDDLFNQLMGNMGGFRSESRRYMINGREVTPEEFAIYRQTGQLPNEGSEQVQHHQGKGMKQDGILAKLGRNLT
EEAREGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGT
QYRGSFEENIQNLIQEVKAMGNVVLFFDEIHQILGAGSTGDGQGSKGLADIIKPALSRGELTVIGATTQDEYRNTILKNA
ALARRFNEVKVNAPSAEDTFKILQGIRDLYEKHHNVILPDEVLKAAVDYSIQYIPQRSLPDKAIDLVDVTAAHLAAQHPV
TDVHAVEHEIEEEKAKQEAAAAKEDYEAALNAKVRIEELEKKIENHTEDHKVTATINDVAESVERMTGIPVSQMGATDIE
RLKDMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEY
SDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIA
TSNAGFGYEANLTEDADKPELMDRLKPYFRPEFLNRFDAVIEFSHLSKEDLSKIVDLMLVEVNKTLAKKDIDLTVSDAAK
EYMTEEGYDEVMGVRPLRRVVEQQIRDKVTDFHLDHLEAKHLEADMEDGVLVIREKDTKKEENTDKQAE

Nucleotide

• Length: 2130 bp

>NTDB_id=878138 RDV49_RS00775 WP_003009968.1 171791..173920(-) (clpC) [Streptococcus parasanguinis strain B-1756]
ATGAATAACAACTTTAACAATATGGATGATCTTTTCAATCAACTAATGGGAAACATGGGTGGTTTTCGTTCTGAAAGCCG
TCGCTACATGATCAACGGTCGTGAAGTGACACCAGAAGAATTCGCTATTTACCGCCAAACTGGTCAACTTCCAAATGAAG
GAAGTGAGCAAGTGCAACACCATCAAGGTAAAGGAATGAAACAAGATGGGATCCTTGCAAAACTTGGTCGTAACTTGACC
GAAGAAGCTCGTGAAGGAAAATTGGATCCGGTCATCGGACGTAATAAAGAAATTCAAGAAACTGCTGAAATCTTGTCTCG
TCGTACCAAGAACAACCCTGTCCTTGTAGGGGATGCCGGTGTTGGTAAAACAGCAGTTGTAGAAGGTTTGGCACAAGCTA
TTGTGAACGGGGATGTTCCAGCGGCTATCAAAAACAAAGAAATCATCTCGATTGATATTTCTGGTCTAGAAGCTGGTACG
CAATACCGTGGTAGCTTTGAAGAAAATATTCAAAATCTGATCCAAGAAGTCAAAGCTATGGGAAATGTCGTTCTCTTCTT
TGATGAAATCCATCAAATCCTTGGTGCAGGCAGCACAGGTGATGGTCAAGGATCTAAAGGTCTTGCGGATATCATCAAAC
CTGCTCTTTCACGTGGGGAATTGACTGTCATTGGTGCAACCACTCAAGATGAATACCGTAACACCATCTTGAAGAATGCG
GCTCTTGCTCGTCGTTTCAACGAAGTGAAAGTCAATGCTCCATCAGCTGAAGATACTTTCAAGATTCTCCAAGGGATCCG
TGATCTTTATGAAAAACACCACAATGTCATCTTGCCAGATGAAGTTTTGAAAGCAGCGGTTGATTATTCGATCCAATACA
TTCCACAACGTAGCTTGCCTGATAAGGCCATTGACTTGGTCGATGTGACAGCTGCTCATTTGGCAGCCCAACATCCAGTA
ACAGATGTCCATGCTGTGGAACATGAAATTGAAGAAGAAAAAGCTAAACAAGAAGCTGCAGCTGCTAAAGAAGATTACGA
AGCAGCTCTTAATGCAAAAGTTCGTATCGAAGAACTTGAAAAGAAAATTGAAAACCATACAGAAGACCATAAAGTAACAG
CAACAATCAACGATGTGGCTGAATCAGTAGAACGGATGACTGGTATTCCAGTGTCACAAATGGGTGCAACTGATATCGAA
CGTTTGAAAGATATGGGTCACCGTTTGCAAACTAAGGTTATCGGTCAAGACAAGGCTGTTGAAGCAGTGGCACGTGCTAT
CCGTCGGAACCGTGCAGGATTTGACGAAGGGAACCGTCCAATCGGAAGCTTCCTCTTTGTAGGACCTACTGGTGTTGGTA
AGACGGAATTGGCTAAACAATTGGCGCTTGATATGTTCGGAACCAAAGATGCCATCATCCGTTTGGACATGTCAGAATAC
AGCGACCGTACAGCCGTTTCTAAATTGATTGGTACAACAGCTGGTTATGTTGGTTATGATGACAATAGCAATACTTTGAC
AGAACGTGTTCGTCGTAACCCTTACTCAATCGTCCTTCTTGACGAAATTGAAAAGGCGGATCCTCAAGTGATCACCCTTC
TCCTTCAAGTCTTGGATGATGGTCGTTTGACAGATGGTCAAGGGAACACGGTCAACTTCAAGAACACTGTAATTATCGCT
ACTTCAAACGCTGGCTTTGGTTACGAAGCCAACTTGACAGAAGATGCGGATAAACCAGAACTTATGGATCGTTTGAAACC
TTACTTCCGTCCAGAATTCCTCAACCGTTTCGACGCTGTGATTGAATTCTCACACTTGAGCAAGGAAGACCTTTCTAAGA
TTGTTGACTTGATGTTAGTAGAAGTGAACAAAACTCTTGCTAAGAAAGACATCGACTTGACAGTGAGCGATGCGGCCAAA
GAATACATGACTGAAGAAGGTTATGATGAAGTGATGGGTGTTCGTCCACTCCGTCGAGTAGTTGAACAACAAATCCGTGA
CAAGGTGACCGACTTCCACTTGGATCACCTTGAGGCTAAACACTTAGAAGCTGATATGGAAGATGGTGTACTTGTGATCA
GAGAAAAAGACACAAAGAAAGAAGAAAACACTGATAAACAAGCAGAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (114-246)

• AAA domain (Cdc48 subfamily) (AAA_2) (439-599)

• AAA lid domain (AAA_lid_9) (255-349)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.961	100	0.481
clpE	Streptococcus mutans UA159	47.783	98.59	0.471
clpE	Streptococcus pneumoniae TIGR4	48.408	88.575	0.429
clpE	Streptococcus pneumoniae Rx1	48.408	88.575	0.429
clpE	Streptococcus pneumoniae D39	48.408	88.575	0.429
clpE	Streptococcus pneumoniae R6	48.408	88.575	0.429
clpC	Bacillus subtilis subsp. subtilis str. 168	45.046	91.114	0.41
clpC	Streptococcus pneumoniae D39	42.769	91.678	0.392
clpC	Streptococcus pneumoniae Rx1	42.769	91.678	0.392
clpC	Streptococcus pneumoniae TIGR4	42.615	91.678	0.391
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.436	87.024	0.378
clpC	Streptococcus thermophilus LMD-9	43.274	87.024	0.377
clpC	Streptococcus thermophilus LMG 18311	42.857	87.87	0.377
clpC	Streptococcus mutans UA159	42.718	87.165	0.372