Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QQE96_RS18295 Genome accession   NZ_CP133987
Coordinates   2782679..2783296 (+) Length   205 a.a.
NCBI ID   WP_168523294.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777679..2788296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS18275 (QQE96_18330) - 2777960..2778880 (-) 921 WP_053311318.1 ABC transporter ATP-binding protein -
  QQE96_RS18280 (QQE96_18335) - 2779015..2780667 (-) 1653 WP_168523292.1 SulP family inorganic anion transporter -
  QQE96_RS18285 (QQE96_18340) can 2780933..2781601 (+) 669 WP_053311320.1 carbonate dehydratase -
  QQE96_RS18290 (QQE96_18345) hpt 2781815..2782345 (-) 531 WP_053311321.1 hypoxanthine phosphoribosyltransferase -
  QQE96_RS18295 (QQE96_18350) opaR 2782679..2783296 (+) 618 WP_168523294.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  QQE96_RS18300 (QQE96_18355) lpdA 2783366..2784793 (-) 1428 WP_168523296.1 dihydrolipoyl dehydrogenase -
  QQE96_RS18305 (QQE96_18360) aceF 2785058..2786929 (-) 1872 WP_168523298.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23589.16 Da        Isoelectric Point: 6.1436

>NTDB_id=878115 QQE96_RS18295 WP_168523294.1 2782679..2783296(+) (opaR) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVCQFSNFL
ADNIDLDLHAKENLTNITTAMVSLVVNDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVKNMFIKAIERGEVCNEHDP
EDLATLFHGICYSLFIQANRLPNEESMCTLVKSYLNMLCIYKKEH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=878115 QQE96_RS18295 WP_168523294.1 2782679..2783296(+) (opaR) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGGACGCATCTATAGAGAAACGCCCCAGAACGCGCTTATCACCACAAAAGCGTAAACTTCAATTGATGGAAATCGCTCT
TGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCCGATATCGCTGAAATTGCACAGGTTTCTGTTGCAACGG
TGTTCAATTACTTCCCAACTCGCGAAGATTTAGTGGATGACGTATTAACGCACGTTGTATGTCAATTTTCTAACTTCCTC
GCTGATAATATCGACCTTGATCTGCACGCAAAAGAGAACTTAACCAACATTACTACCGCCATGGTTAGTCTGGTGGTCAA
TGATTGCCACTGGTTAAAAGTGTGGTTTGAGTGGAGTGCCTCAACACGTGAAGAAGTTTGGCCACTGTTTGTTTCTACAA
ACCGCACCAATCAATTACTAGTCAAGAATATGTTTATTAAGGCTATCGAACGTGGTGAAGTATGCAACGAGCATGATCCT
GAAGATCTGGCGACACTTTTCCACGGTATCTGCTACTCGCTCTTTATTCAGGCAAATCGCCTACCGAATGAAGAAAGCAT
GTGCACGTTAGTGAAAAGCTACCTAAATATGCTGTGCATCTACAAAAAAGAGCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766